Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0314 ATGGTTTTGCTGGCCATGTCTGATGGAAAGAATATGAGTAATGAGGAATCTCACGTGCAGACATGTGAGGTGCAGAAGGGATGGTTATTTGGTCAGGGTGACGGTGTCTCCTATTCCTACGGAGGAGAAGGGGGATTAGGGTTTTTGAGGGGTTATATTGCTCCTGCAAGCAATGGCTTCAATTCCAATTTGTCTGATTTTAAGTCCATTGGACCAAACCCTAGGCTTCTCCGATTGTTTTCCAGTGAAGCCCCTGAGAAAAAGAATTATGAGAACTTCTACCCCAAGGAAAAGAAGGAAGTTCCAAAGGGAGATGGTTCAAAACAGGAATCTAAAGATGACTCGAACACAAGGACAAATGATCATGAAAATTTGAAAGATTTTTTCATGAAGCAATTTCAGAACATATTACCTTTATTGATGTTGGGGGTATTCCTTACCTTTTCACTTGATCCTCACGAACAACAGCAGGTAGCCGTAGCTTCAAGCATCTTACCGCAACCTATTGAGATCAGCTTTCAGGAGTTTAAAAATAAGCTTTTGGAACCAGGCATAGTTGACCATATTGTTGTTTCAAATAAGTCAATTGCCAAAGTATATGTAAGGAGCTCTCCCCATAACCTAGCAGACAGTGAAGTTGTCCAAGGGACTCTCCCTGGACAAAGAACCGGTGGCCAATATATGTACTATTTCAATATTGGAAGTGTTGAGTCTTTTGAGGAGAAGCTAGAGGAAGCGCAAGAAGCGCTAGGCATTGACCCTCATGATCATGTTCCTGTTACATATTCTTCTGATATTGTTTGGTTCCAGGAATTATTAAGATTTGCACCTACACTGCTACTTTTGGGAACTCTTCTCTATATGGGAAGGAAAATGCAAGGTGGGCTTGGTATTGGTGGTCCTGGTGGCGGTAAGGGTGGCCGTGGCATATTCAACATGGGAAAAGCCCCTGTTACCAAAGTAGACAAAAATGCCAAAAACAAGGTTTTTTTCAAAGATGTTGCTGGTTGTGATGAGGCAAAGCAAGAAATTATGGAGTTCGTCCACTTCCTTAAGAGCCCAAAGAAATATGAAGAACTCGGTGCAAAAATTCCAAAAGGTGCTCTTTTGGTGGGTCCTCCTGGCACAGGAAAAACCCTTTTAGCAAAAGCAACTGCAGGGGAATCTGGTGTGCCATTTTTTTCTATATCTGGTTCTGATTTCATGGAAATGGTTGTTGGTGTTGGACCGTCTAGGGTGAGAAACTTGTTTCAGGAAGCAAGGCAGTGTGCTCCCAGTATAATATTTATTGATGAGATTGATGCAATTGGTCGAGCAAGGGGACGTGGAGGTCTTTCTGGTGGAAATGATGAGCGTGAAAGTACATTGAATCAGCTGTTGGTGGAGATGGATGGTTTTGGAACTACTGCTGGAGTTGTTGTACTTGCAGGAACAAATAGACCCGATATCTTAGATAAAGCTCTACTTAGGCCTGGGCGATTTGACCGCCAGGTAACCATTGATGAGCCTGATATTAAAGGCCGTGACCAGATATTTCAGATCTACTTGAAAAAGATCAAACTTGACCATGAACCTTCATATTTTTCACAAAGGCTTGCGGCTCTTACCCCGGGATTTGCTGGTGCAGACATTGCTAATGTTTGTAATGAAGCTGCTCTGATTGCTGCAAGATGTGAGCAAAAACAAGTCACAATGGAACATTTTGAGGCAGCTATTGATAGGATCATTGGTGGTCTAGAGAAGAGGAACAGGGTAATAAGCAAGCTTGAAAGGCGTACTGTTGCTTATCATGAATCAGGCCATGCTGTTACAGGCTGGTTCTTGGAACATGCTGAACCATTACTGAAAGTAACCATAGTTCCTCGTGGCACAGCAGCTCTTGGATTTGCCCAGTATGTTCCAAATGAGAACCTTCTCATGACAAAGGAGCAGCTTTTTGATATGACTTGCATGACTCTGGGCGGTCGGGCTGCTGAGCAGGTTCTCATTGGGAGAATATCAACCGGAGCTCAAAATGACTTGGAAAAGGTGACCAAGATGACGTATGCGCAAGTAGCAGTCTATGGTTTTAGTGACAAAGTTGGCCTTCTCTCTTTCCCACAACGAGAGGACTCATTTGAGATGTCAAAACCATACAGCAGTAAGACTGCTGCAATCATTGATAATGAAGTGCGCGAATGGGTAGGCAAAGCATATGAACGAACAATACAGCTTATGGAGGAACACAAGGAACAAGTGGCTACAATTGCAGAGTTGCTTCTTGAAAAAGAGGTACTTCACCAAGAGGACTTGGTTCGAGTTTTGGGTGAGCGGCCATTCAAGTCTGCCGAACCCACCAATTATGATAGATTTATTCAAGGTTTTCAGGAGGACGAGGAGAAGATAATAGAAAAACCTGTCAATGAGCCTGAGGAGAGTGGAGTTATAAGTGTTGAGTACCCAAAAAGTAGTTACAAGGCTGAACCAATTGGGAGGCGAGGCGATTTGTGTCCACGCCGCCATGGTCTGCGGCTGTGGCCACTGCCACACTGGGCTATCGATTTGTGTCCACGCCGTCATGGTCTGCGGCTGTGGCCACTGCCACACTGGGCTATCTTAATAGTCATGCTCACTCCTATGTGTGTTGTTAACTTCCCGGAGTTAGAACTGCAGCGCGAGCTTCCTGTGTTTCTCCGAAGGATGATTTTTTTAAAGATTGGGCGCTCCCTGTCACGTTCTTCTCGTGCCAGAAATTTGTTGCACGGTGATGGGAGAATTGGAATCCTCGTGGGAGCGCCACGTATGAATGCAGAAGCAGCAGAAAAGGGATTAGGGTTTTTCAGAGGTTACGTAGTTCCTGCTAGAACTGGAGGCAATGTCTTCATTTCCAATTTTTCTGATTTTAAGTCAGTTGCAGCAAAGTCTAGGCTTTATCGCCTGTTTTGCAGCGAAGCCCCTAAGAAAAAGAATTATGAGAACTTTTACCCCAAGGGAAAGAAGGAAGATCCCAAAGGAAACAATAAAAAAAATGAGTCTAAAGATAACTCGAACACAGACACAGATGATCACGGTCTTCACCAAATAGTTTTCGAGATCAAATTTAAAGATATGTTATCTTTATTGCTGATTGGGCTGTTTATTGCCATATCACTAATTCCTCGTGAGCAGCCACAGATCAGCTTTCAGGAATTTAAAAATAAACTTTTGGAACCAGGCCTAGTAGACCATATTGTTGTTCTAAATAAGTCAATTGCCAAAGTATATATAAGGAGCTCTCCCCGTGACCAAGCAGACAGTGAAGTTGTCCAAGGGACCTCCCCTGGACAAAGAACTGGAGGCCACTATATGTACTCTATCAATATTGGAAGTATTGAGTCTTTTGAGGAAAAGTTAGAGGAAGCGCAAGAAGCACTAGGCATTGACCCTCATGATCATATTCCTGTTTCATATGCTTCTGAAACGGACTGGTTCAAGGAATTTTTGAGATTCTCTCTACCACTATTGTTTTTGGGATCAGTACTGTATACAGGAAGGAAAGCGCAAGGTGGATTTGGCATTGGTGGTCCTGGTGGTGGTAAGGGTCCTGGTGGAATATTCAACTTAGGAAAAGCCAAGGTTACTAAAGTAGACAAAAATTCTGCAAACAAGGTCTTTTTCAAAGATGTTGCTGGTTGTGATGAGGCAAAGGCAGAAATTATGGAGTTTGTCCACTTCCTCAAAAACCCAAAGAAATATGAAGAACTCGGTGCAAAAATTCCTAAAGGTGCTCTTCTGGTGGGTCCTCCAGGCACCGGAAAAACCCTTTTAGCTAAAGCAACTGCTGGGGAATCTGGTGTGCCATTTCTTTCAATTTCTGGTTCTGATTTTGTGGAAATGTTCGTTGGTGTTGGACCATCTCGGGTGAGAAGCTTGTTTCAGGAAGCAAGGCAGTGTGCTCCCAGTATAATACTTATTGATGAGATTGATGCAATTGGTCGGGCGAGAGGGCGTGGAGGTTCCTCTGGTGCAAATGATGAGCGTGAAAGTACTTTAAATCAATTGTTGGTGGAGATGGATGGTTTTGGAACCACTGCTGGGGTTGTTGTTCTTGCAGGAACAAATAGACCTGATATCTTAGACAAGGCTCTACTTAGGCCTGGGCGATTTGACCGCCAAATATCCATTGATAAACCTGATATTAAAGGCCGTGACCAGATATTTCAGATCTACTTGAAGAAGATCAAACTTGACCATGAGCCTTCGTATTTTTCACAAAGGCTTGCAGCGCTTACGCCAGGATTTGCTGGTGCAGACATTGCTAACGTTTGTAATGAAGCTGCTCTGATAGCTGCAAGATGTGAGGAAACACAAGTCACTATGAAACATTTTGATGCAGCTATTGATAGGGTCATTGGTGGTTTGGAGAAGAAGAACTTGGTAATAAGCAAGCTTGAGAGGCGTACTGTTGCTTACCATGAATCGGGCCATGCCGTTGCAGGCTGGTTCTTGGAACATGCTGAACCATTATTGAAAGTAACTATAGTTCCTCGTGGCACAGCAGCACTTGGATTTGCTCAATATGTTCCAAATGAGAACCTTCTCATGACAAAGGAGCAGCTTTTTGATATGACTTGCATGACTCTTGGCGGTCGAGCTGCTGAGCAAGTTCTCATTGGGAGAATATCAACCGGAGCTCAAAATGACTTGGAAAAGGTGACCAAGATGACATATGCGCAAGTAGCAGTCTATGGTTTTAGTGACAAAGTTGGCCTTCTCTCTTTCCCTCAACGAGAGGACTCTTTTGAGATGTCGAAACCGTACAGCAGTAAGACTGCTGCAATCATTGATAATGAAGTGCGCGAATTGGTAAGCAAAGCATACGAGCATACTCTACAACTTATCGAGGAACACAAGGAACAAGTGTCCCAAATTGCAGAGTTGCTGCTTGAAAAAGAAGTGCTTCACCATGATGACTTGGTTCAAGTTTTAGGCGAGCGGCCATTCAAGTCTACCGAGGCCACAAATTACGATAGATTTAAGGAAGGTTTTCAAAAAGAAATGCTCTCTGATGCTTCATCATTAGAACCTGAGGTTGTGCCCACGTAA 5064 0.4354 MVLLAMSDGKNMSNEESHVQTCEVQKGWLFGQGDGVSYSYGGEGGLGFLRGYIAPASNGFNSNLSDFKSIGPNPRLLRLFSSEAPEKKNYENFYPKEKKEVPKGDGSKQESKDDSNTRTNDHENLKDFFMKQFQNILPLLMLGVFLTFSLDPHEQQQVAVASSILPQPIEISFQEFKNKLLEPGIVDHIVVSNKSIAKVYVRSSPHNLADSEVVQGTLPGQRTGGQYMYYFNIGSVESFEEKLEEAQEALGIDPHDHVPVTYSSDIVWFQELLRFAPTLLLLGTLLYMGRKMQGGLGIGGPGGGKGGRGIFNMGKAPVTKVDKNAKNKVFFKDVAGCDEAKQEIMEFVHFLKSPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFFSISGSDFMEMVVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGLSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQVTIDEPDIKGRDQIFQIYLKKIKLDHEPSYFSQRLAALTPGFAGADIANVCNEAALIAARCEQKQVTMEHFEAAIDRIIGGLEKRNRVISKLERRTVAYHESGHAVTGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGRISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQREDSFEMSKPYSSKTAAIIDNEVREWVGKAYERTIQLMEEHKEQVATIAELLLEKEVLHQEDLVRVLGERPFKSAEPTNYDRFIQGFQEDEEKIIEKPVNEPEESGVISVEYPKSSYKAEPIGRRGDLCPRRHGLRLWPLPHWAIDLCPRRHGLRLWPLPHWAILIVMLTPMCVVNFPELELQRELPVFLRRMIFLKIGRSLSRSSRARNLLHGDGRIGILVGAPRMNAEAAEKGLGFFRGYVVPARTGGNVFISNFSDFKSVAAKSRLYRLFCSEAPKKKNYENFYPKGKKEDPKGNNKKNESKDNSNTDTDDHGLHQIVFEIKFKDMLSLLLIGLFIAISLIPREQPQISFQEFKNKLLEPGLVDHIVVLNKSIAKVYIRSSPRDQADSEVVQGTSPGQRTGGHYMYSINIGSIESFEEKLEEAQEALGIDPHDHIPVSYASETDWFKEFLRFSLPLLFLGSVLYTGRKAQGGFGIGGPGGGKGPGGIFNLGKAKVTKVDKNSANKVFFKDVAGCDEAKAEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFVEMFVGVGPSRVRSLFQEARQCAPSIILIDEIDAIGRARGRGGSSGANDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQISIDKPDIKGRDQIFQIYLKKIKLDHEPSYFSQRLAALTPGFAGADIANVCNEAALIAARCEETQVTMKHFDAAIDRVIGGLEKKNLVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGRISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQREDSFEMSKPYSSKTAAIIDNEVRELVSKAYEHTLQLIEEHKEQVSQIAELLLEKEVLHHDDLVQVLGERPFKSTEATNYDRFKEGFQKEMLSDASSLEPEVVPT 1687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0314 1687 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 1157 1649 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lal1g0314 1687 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 268 768 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lal1g0314 1687 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 75 1664 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lal1g0314 1687 MobiDBLite consensus disorder prediction 985 1013 - -
Lal1g0314 1687 PANTHER ATP-DEPENDENT PROTEASE 43 802 - -
Lal1g0314 1687 PANTHER ATP-DEPENDENT PROTEASE 931 1673 - -
Lal1g0314 1687 Gene3D - 1193 1382 IPR027417 -
Lal1g0314 1687 Gene3D - 312 501 IPR027417 -
Lal1g0314 1687 ProSitePatterns AAA-protein family signature. 472 490 IPR003960 GO:0005524|GO:0016887
Lal1g0314 1687 SUPERFAMILY FtsH protease domain-like 585 775 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal1g0314 1687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1208 1456 IPR027417 -
Lal1g0314 1687 SUPERFAMILY FtsH protease domain-like 1466 1656 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal1g0314 1687 SMART AAA_5 364 504 IPR003593 -
Lal1g0314 1687 SMART AAA_5 1245 1385 IPR003593 -
Lal1g0314 1687 Pfam Peptidase family M41 1466 1648 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal1g0314 1687 Pfam Peptidase family M41 584 766 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal1g0314 1687 ProSitePatterns AAA-protein family signature. 1353 1371 IPR003960 GO:0005524|GO:0016887
Lal1g0314 1687 CDD AAA 365 502 - -
Lal1g0314 1687 Gene3D - 503 579 - -
Lal1g0314 1687 Gene3D - 1384 1460 - -
Lal1g0314 1687 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 75 806 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lal1g0314 1687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 575 IPR027417 -
Lal1g0314 1687 Gene3D Peptidase M41 585 784 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal1g0314 1687 Gene3D Peptidase M41 1466 1668 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal1g0314 1687 Gene3D - 161 266 - -
Lal1g0314 1687 Gene3D - 1040 1149 - -
Lal1g0314 1687 MobiDBLite consensus disorder prediction 91 120 - -
Lal1g0314 1687 Pfam AAA+ lid domain 1412 1451 IPR041569 -
Lal1g0314 1687 Pfam AAA+ lid domain 531 570 IPR041569 -
Lal1g0314 1687 Pfam ATPase family associated with various cellular activities (AAA) 369 501 IPR003959 GO:0005524|GO:0016887
Lal1g0314 1687 Pfam ATPase family associated with various cellular activities (AAA) 1250 1382 IPR003959 GO:0005524|GO:0016887
Lal1g0314 1687 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 43 802 - -
Lal1g0314 1687 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 931 1673 - -
Lal1g0314 1687 Pfam FtsH Extracellular 1034 1136 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Lal1g0314 1687 Pfam FtsH Extracellular 137 255 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Lal1g0314 1687 CDD AAA 1246 1383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0314 Lal-Chr1 1905523 1920747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0314 43 803 Miscellaneous Gene Families AT2G29080 76.893 0.0 1127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0314 K08956 - gmx:100806656 1184.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0314 1 1905523 1920747 Lal1g0314 1 1905523 1920747 ECH
Lal1g0314 1 1905523 1920747 Lal2g0215 2 1260795 1265692 LSH
Lal1g0314 1 1905523 1920747 Lal9g0220 9 1354086 1359215 LSH