Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0171 ATGGCTGTCTCTGCTCACCTCTTCCGTTTTCCATTGACTAGAACCGACCTCGCCTTTCCGGAGAATCTCAACAGAGTTCGAAGCCGAAAACCTTTCTCCCTTCGATGCTCCGGCGATTCCTCTCCGGCGTCTATTGATTCTGATTTCGATGCAAAAGTGTTCAGAAAGAACCTAACGAGGAGCAAGAATTACAACCGAAAAGGTTTTGGTCACAAAGAGGAGACCCTCCAGCTCCTCAATCAGGAGTACCAATCCAGTGACATAATTAATACATTGAAGGAAAATGAGTATGAGTATACATGGGGCAACATCACGGTGAGGCTAGCTGAAGCCTATGGATTTTGTTGGGGAGTTGAGAGAGCCGTTCAAATTGCATATGAGGCCAGGATACAGTTTCCAACTCAGTCACTATGGCTTACCAATGAAATCATCCACAACCCAACTGTTAATAAGCGGCTGGAGGATATGGAAGTGAAGACCATCCCGGTGAAGGAAGGAAAAAAACAATTTGAAGTTGTGAACAAGGGTGATGTTGTTATATTGCCTGCTTTTGGAGCAGCAGTGGATGAGATGTTGACTTTGAGTGACAAAAATGTTCAAATTGTTGATACAACTTGTCCCTGGGTTTCAAAGGTATGGAATTCTGTTGAAAAGCACAAGAAAGGAGATTATACATCAATAATTCATGGTAAATATTCTCATGAGGAAACTGTGGCAACTTTATCTTTTGCCGGAAAGTATGTTATTGTGAAGAATTTGGCCGAGGCTGAATATGTCTGTGACTATATTCTTGGCGGTGAATTAAATGGATCCAGTTCAACCAAAGAAGCATTTTTAGAGAAATTTAAATTTGCAGTTTCTGAAGGCTTCAATCCAGACAATGACCTGATAAAAGCAGGCATTGCAAATCAGACAACAATGCTGAAGGGAGAGACTGAAGAAATTGGTAAACTGTTGGAGAGGACGATGATGCGCAAATTTGGTGTAGAACACGTCAATGAGCACTTCATAAGCTTCAACACAATTTGTGATGCTACCCAGGAGAGACAAGATGCTATGTACAAGCTGGTGGAGAGAGATTTGGATCTGATCTTGGTAGTTGGTGGATGGAACTCAAGCAATACATCTCACCTGCAAGAGATAGCTGAGGAACGCGGAATTCCTTCTTACTGGATTGACAGTGAGCAAAGAATTGGTCCAGGAAACAGAATAGCATACAAGTTGAATCATGGTGAGCTGGTAGAGAAAGAAAACTTTCTGCCAGAGGGTCCAATAACAATTGGTGTGACATCTGGTGCATCCACACCAGACAAGGCTGTTGAAGATGCACTTATCAAGGTGTTTGACTTGAAACGTGAAGAAGTATTGCAACTCTAG 1377 0.4234 MAVSAHLFRFPLTRTDLAFPENLNRVRSRKPFSLRCSGDSSPASIDSDFDAKVFRKNLTRSKNYNRKGFGHKEETLQLLNQEYQSSDIINTLKENEYEYTWGNITVRLAEAYGFCWGVERAVQIAYEARIQFPTQSLWLTNEIIHNPTVNKRLEDMEVKTIPVKEGKKQFEVVNKGDVVILPAFGAAVDEMLTLSDKNVQIVDTTCPWVSKVWNSVEKHKKGDYTSIIHGKYSHEETVATLSFAGKYVIVKNLAEAEYVCDYILGGELNGSSSTKEAFLEKFKFAVSEGFNPDNDLIKAGIANQTTMLKGETEEIGKLLERTMMRKFGVEHVNEHFISFNTICDATQERQDAMYKLVERDLDLILVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENFLPEGPITIGVTSGASTPDKAVEDALIKVFDLKREEVLQL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0171 458 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 2 457 - -
Lal9g0171 458 CDD lytB_ispH 106 444 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Lal9g0171 458 Pfam LytB protein 106 443 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Lal9g0171 458 Gene3D - 340 457 - -
Lal9g0171 458 Gene3D - 115 205 - -
Lal9g0171 458 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 104 451 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Lal9g0171 458 Gene3D - 206 339 - -
Lal9g0171 458 TIGRFAM ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 106 444 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0171 Lal-Chr9 1052373 1055014 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0171 K03527 - gmx:100818067 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0171 9 1052373 1055014 Lal9g0171 9 1052373 1055014 ECH
Lal1g0246 1 1486659 1490034 Lal9g0171 9 1052373 1055014 LSH
Lal2g0156 2 946966 950348 Lal9g0171 9 1052373 1055014 LSH