Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0156 ATGGCTGTGTCAGCTCACCTGTGCCGTCTTCCGTTTACTAGAACCGACCTCTCATTGCCGGAAAACCACTTCAGAATTCAAACACGGAAGCCTTTCTCCCTCCGATGCTCCGGCGATTCCTCTCCGGCGCCGGTTGATTCGGATTTCGATGCAAAGGTGTTCAGGAAGAACTTAACAAGGAGCAAGAATTATAATCGCAAAGGTTTTGGTCACAAGGAAGAGACCCTCCAGCTTTTGAATCGCGAGTACCAAGCTAGTGATATCATTCCGACGTTGAAGGAAAATGGGTATGAGTATACATGGGGCAATGTCACCGTGAGGTTAGCTGAAGCCTATGGCTTTTGTTGGGGAGTTGAGAGAGCTGTTCAGATTGCTTACGAGGCGAGGAAACAGTTTCCCAATGAGTCCCTATGGCTTACCAATGAAATCATACACAACCCAACTGTTAGCAAGCGGCTGGAGGAGATGAAAGTGCAGATCATCCCTTTGGAGGAAGGAAAAAAACAATTTGAGGTTGTCAACAAGGGTGATGTAGTCATATTGCCTGCTTTTGGAGCAGCGGTAGATGAAATGTTGACTCTGAGTGACAAAAATGTTCAAATTGTTGATACAACTTGTCCATGGGTTTCAAAGGTATGGAATACTGTTGAAAAGCACAAGAAAGGAGATTATACCTCAATAATTCATGGTAAGTATACCCATGAGGAAACTGTGGCAACTGTCTCTTTTGCTGGAAAGTATATCATTGTGAAGAATATGGCAGAGGCTGAATATGTTTGTGACTATATTCTTGGGGGTGAATTAAATGGATCCAGTTCAACCAAAGAAGCATTTTTAGAGAAATTTAAATTTGCAGTTTCTGAGGGCTTTGACCCAGATAGTGACCTGATAAAATTAGGCATTGCAAATCAGACAACAATGCTGAAGGGAGAGACTGAAGAAATGGGGAAACTAGTGGAGAGGACTATGATGCACAAATTTGGTGTAGAAAACGTAAATGAACACTTCGTAAGCTTCAACACAATTTGTGATGCTACTCAGGAGAGACAAGATGCTATGTACAAGCTGGTGGAGAAAGATTTGGATCTTATTTTGGTAATTGGTGGATGGAACTCAAGCAATACATCACACCTGCAAGAGATAGCTGAGGAGCGTGGAATTCCTTCTTACTGGATTGACAACGAACAAAGAATTGGCCCAGGAAACAGAATAGCACACAAGCTGAATCATGGTGAGCTGGTGGAGAAAGAAAACTTTCTGCCACAGGGTCCAATAACAATTGGTGTGACATCTGGTGCATCCACACCAGACAAGGCTGTTGAAGATGCACTTATCAAGGTGTTTGACTTGAAACGTGAAGAAGCATTGCAACTCTCGTAA 1380 0.4304 MAVSAHLCRLPFTRTDLSLPENHFRIQTRKPFSLRCSGDSSPAPVDSDFDAKVFRKNLTRSKNYNRKGFGHKEETLQLLNREYQASDIIPTLKENGYEYTWGNVTVRLAEAYGFCWGVERAVQIAYEARKQFPNESLWLTNEIIHNPTVSKRLEEMKVQIIPLEEGKKQFEVVNKGDVVILPAFGAAVDEMLTLSDKNVQIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGKYTHEETVATVSFAGKYIIVKNMAEAEYVCDYILGGELNGSSSTKEAFLEKFKFAVSEGFDPDSDLIKLGIANQTTMLKGETEEMGKLVERTMMHKFGVENVNEHFVSFNTICDATQERQDAMYKLVEKDLDLILVIGGWNSSNTSHLQEIAEERGIPSYWIDNEQRIGPGNRIAHKLNHGELVEKENFLPQGPITIGVTSGASTPDKAVEDALIKVFDLKREEALQLS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0156 459 CDD lytB_ispH 106 444 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Lal2g0156 459 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 104 451 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Lal2g0156 459 Gene3D - 340 458 - -
Lal2g0156 459 Pfam LytB protein 106 443 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Lal2g0156 459 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 1 457 - -
Lal2g0156 459 TIGRFAM ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 106 444 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Lal2g0156 459 Gene3D - 115 205 - -
Lal2g0156 459 Gene3D - 206 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0156 Lal-Chr2 946966 950348 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0156 K03527 - gmx:100818067 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0156 2 946966 950348 Lal2g0156 2 946966 950348 ECH
Lal1g0246 1 1486659 1490034 Lal2g0156 2 946966 950348 LSH
Lal2g0156 2 946966 950348 Lal9g0171 9 1052373 1055014 LSH