LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal9g0122	ATGAGTGCCTCTAGGTTCATCAAATGTGTCACTGTTGGTGATGGTGCTATTGGCAAGACTTGTATGCTTATCTCTTACACCAGCAACACTTTCCCTACGGACTATGTTCCAACTGTCTTTGACAATTTCAGTGCGAATGTAGTTGTGGATGGGAGTACCGTGAATCTGGGTTTGTGGGATACTGCTGGACAAGAAGATTACAATAGGCTAAGGCCTTTAAGCTATCGTGGAGCAGATGTATTCCTTCTTGCATTCTCTCTCATAAGCCGGGCCAGCTATGAAAATGTTTCTAAAAAATGGGTTCCTGAATTGAGGCATTATGCTCCTGGTGTTCCAATTATTCTTGTTGGTACCAAACTTGATCTTCGGGATGATAAGCAGTTCTTTCAAGATCATCCTAGTGCAGTGCCTATCACCACATTGCAGGGTGAGGAACTAAGAAAACTTATCGGCGCTCCAGTTTACATTGAATGCAGTTCAAAAACACAGCAGAATGTAAAAGCCGTTTTTGATTCGGCCATCAAAGTAGTTCTCCAGCCTCCAAAGCAGAAGAAAAAGAAGAAAAAAGGACAAAAGGCCTGTTCCATTTTGTGA	594	0.4242	MSASRFIKCVTVGDGAIGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENVSKKWVPELRHYAPGVPIILVGTKLDLRDDKQFFQDHPSAVPITTLQGEELRKLIGAPVYIECSSKTQQNVKAVFDSAIKVVLQPPKQKKKKKKGQKACSIL	197

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal9g0122	197	CDD	Rop_like	6	178	-	-
	Lal9g0122	197	Pfam	Ras family	8	178	IPR001806	GO:0003924\|GO:0005525
	Lal9g0122	197	PANTHER	RHO FAMILY GTPASE	1	197	IPR003578	GO:0005525\|GO:0007264
	Lal9g0122	197	SMART	rho_sub_3	9	180	IPR001806	GO:0003924\|GO:0005525
	Lal9g0122	197	TIGRFAM	small_GTP: small GTP-binding protein domain	7	171	IPR005225	GO:0005525
	Lal9g0122	197	Gene3D	-	5	192	IPR027417	-
	Lal9g0122	197	PANTHER	RAC-LIKE GTP-BINDING PROTEIN ARAC3	1	197	-	-
	Lal9g0122	197	ProSiteProfiles	small GTPase Rho family profile.	1	177	-	-
	Lal9g0122	197	SMART	rab_sub_5	7	180	-	-
	Lal9g0122	197	ProSiteProfiles	small GTPase Rab1 family profile.	2	197	-	-
	Lal9g0122	197	PRINTS	Transforming protein P21 ras signature	7	28	-	-
	Lal9g0122	197	PRINTS	Transforming protein P21 ras signature	30	46	-	-
	Lal9g0122	197	PRINTS	Transforming protein P21 ras signature	47	69	-	-
	Lal9g0122	197	PRINTS	Transforming protein P21 ras signature	109	122	-	-
	Lal9g0122	197	PRINTS	Transforming protein P21 ras signature	155	177	-	-
	Lal9g0122	197	SMART	ras_sub_4	4	180	-	-
	Lal9g0122	197	ProSiteProfiles	small GTPase Ras family profile.	2	197	IPR001806	GO:0003924\|GO:0005525
	Lal9g0122	197	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	6	178	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal9g0122	Lal-Chr9	802761	811959	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal9g0122	7	180	EF-hand Containing Proteins	AT5G27540	27.586	9.07e-17	75.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal9g0122	K04392		-	gmx:100785464	362.844

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal9g0122	9	802761	811959	Lal9g0122	9	802761	811959	ECH
	Lal9g0122	9	802761	811959	Lal15g1524	15	17363601	17367607	ECH
	Lal9g0122	9	802761	811959	Lal23g1478	23	15099194	15102743	ECH
	Lal1g0167	1	1055570	1061735	Lal9g0122	9	802761	811959	LSH
	Lal2g0100	2	633582	636372	Lal9g0122	9	802761	811959	LSH