Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1478 ATGAGCGCTTCAAGGTTCATCAAATGTGTCACTGTTGGGGATGGAGCTGTTGGTAAAACTTGTTTGCTAATTTCCTACACCAGCAACACTTTCCCCACTGATTATGTGCCAACTGTTTTTGACAATTTCAGCGCAAATGTGGTTGTCAATGGAAGCATTGTTAATCTGGGTTTGTGGGACACTGCTGGACAAGAGGATTATAACAGATTAAGACCTTTGAGTTACCGTGGTGCCGATGTTTTCATACTGGCTTTCTCTCTCATTAGCAAGGCCAGTTATGAAAACGTGTCCAAGAAGTGGATTCCCGAGTTGAAGCATTATGCACCTGGTGTCCCCATAATTCTGGTCGGCACAAAGCTTGATCTTCGGGATGATAAGCAGTTTTGCATTGACCATCCTGGTGCTGTGCCCATTACTGCAGCTCAGGGAGAAGAGCTTAGGAAGCTGATTAACGCACCGGCTTACATTGAATGCAGTTCAAAAACGCAGGAGAATGTGAAGGCAGTGTTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCAAAGCAGAAGAAAAAGAAGAATAAAGCAGGGTGTTCAATATTGTGA 588 0.4422 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSIVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFCIDHPGAVPITAAQGEELRKLINAPAYIECSSKTQENVKAVFDAAIRVVLQPPKQKKKKNKAGCSIL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1478 195 CDD Rop_like 6 178 - -
Lal23g1478 195 ProSiteProfiles small GTPase Ras family profile. 2 195 IPR001806 GO:0003924|GO:0005525
Lal23g1478 195 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Lal23g1478 195 PRINTS Transforming protein P21 ras signature 7 28 - -
Lal23g1478 195 PRINTS Transforming protein P21 ras signature 30 46 - -
Lal23g1478 195 PRINTS Transforming protein P21 ras signature 47 69 - -
Lal23g1478 195 PRINTS Transforming protein P21 ras signature 109 122 - -
Lal23g1478 195 PRINTS Transforming protein P21 ras signature 155 177 - -
Lal23g1478 195 PANTHER RHO FAMILY GTPASE 1 195 IPR003578 GO:0005525|GO:0007264
Lal23g1478 195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Lal23g1478 195 TIGRFAM small_GTP: small GTP-binding protein domain 7 171 IPR005225 GO:0005525
Lal23g1478 195 Gene3D - 5 193 IPR027417 -
Lal23g1478 195 SMART rab_sub_5 7 180 - -
Lal23g1478 195 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 195 - -
Lal23g1478 195 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
Lal23g1478 195 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Lal23g1478 195 ProSiteProfiles small GTPase Rab1 family profile. 2 195 - -
Lal23g1478 195 SMART ras_sub_4 4 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1478 Lal-Chr23 15099194 15102743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1478 7 180 EF-hand Containing Proteins AT5G27540 25.862 1.96e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1478 K04392 - gmx:100808748 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1478 23 15099194 15102743 Lal23g1478 23 15099194 15102743 ECH
Lal1g0167 1 1055570 1061735 Lal23g1478 23 15099194 15102743 ECH
Lal2g0100 2 633582 636372 Lal23g1478 23 15099194 15102743 ECH
Lal9g0122 9 802761 811959 Lal23g1478 23 15099194 15102743 ECH
Lal15g1524 15 17363601 17367607 Lal23g1478 23 15099194 15102743 LSH
Lal23g1478 23 15099194 15102743 Lal15g1524 15 17363601 17367607 PCT
Lal15g1524 15 17363601 17367607 Lal23g1478 23 15099194 15102743 PCT