Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0119 ATGGGTTTCTTAAGCACTATATTTGGTTTTTTTGGATTCGGATTTGGGATATTAATTGGTCTTGTAGTTGGTTATTTTTTCTTCATTTACTTTCAACCCACGCATGTTAAGGATCCTGAAATCAAGCCATTGACGGAGCAAGACCCAGTAACATTGCAAAAAATGCTTCCTGAGATCCCTATTTGGATTAAAAATCCTGACTCTGATAGGGTTGACTGGCTTAACAAGTTTATAGAATATTTGTGGCCTTACCTTGATAAAGCAATTTGCAAGACTGCCAAGAACATTGCTATGCCCATTATTGCTGAGCAGATTCCAAAGTATAAAATTGATGGTGTTGAGTTTGAAACACTCACACTGGGCTCCCTGCCCCCAACTTTTCAAGGAATGAAAGTTTATGTGACTGATGAGAAGGAGTTAATTATGGAGCCTTCTGTAAAATGGGCTGGAAATCCAAATGTCACTATATCTGTTAAGGCATTTGGGCTGAAAGCAACCGTTCAGGTTCTGGATTTGCAAGTTTTTCTTGCTCCTCGCATTACTTTGAAGCCTTTGGTTCCAACTTTTCCTTGCTTTGCCAATATCTATGTCTCCCTCATGGAAAAGCCACATGTTGATTTTGGGCTAAAGGTTGTAGGGGCCGATCTTATGTCTATTCCTGGCATCTACAGGTTTGTTCAGGAGCTTATCAAAGATCAGGTTGCAAACATGTATTTATGGCCCAAAACCTTAGAAGTTCAAATATTAGATCCAACAAAGTATGTTATGCATTTTTCTAAAATATTTTTTCGTGATGGTACATTACTTTTAACACTTGTTGTTATTCATGTAAATGTTATTGAGAACCTCAGAGCCATGAAGAGGCCTGTCGGAATTTTACACGTGAAGGTTCTGAGAGCAATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTATGTGAAGTTAAAGATGACTGGTGATAAGATGCCATCGGAAAAGACTACTGTCAAGTACAAGAACTTGAATCCTGAATGGAATGAAGAATTTAATTTGTCTGTTAAAGATACCGAGTCCCAAGTTTTAGAGATTAATGTTTATGACTGGGGGCAGGTTCGGAAGCATGACAAGATGGGTATGAATGTGATCCCTTTAAAAGCAATTTCCCCTGAAGAGCCTAAAGAATTTACTCTTGGCCTCCTAAAAAATATGGATCCTAATGATGTCCATAATGTGAAATCACATGGGCATATTGTTGTAGAATTGACATATAAACCCTTCAAGGAAGGTGAGTTGGCCAAGGGTTTTGAAGAGAAACACAAAGTACAAAAAGCTCCTGAAGGTACTCCTACTGGTGGAGGTTTACTTGTAGTTATAGTCCATGAAGCTGAAGATGTTGTAGGGAAGTACCACACTAATCCATATGTTCGGGTTACTTTGACCGGGCAGGAGAAGAAGACTAAGCGCATTAAAAGGAACAGAGATCCAAGATGGGAAGAAGAATTCGGATTTACGTTGGAGGAGCCTCCCACTAACCAAAGATTGCATGTGGAGGTTATCAGCACTTCATCAAGAAGTCTGCTCCATCAAAAGGAATCATTGGGATATATCGATATAACTCTAGCGGATGTTGTTTTGAACAAGAGAATCAATGAGAAGTATCATCTTATAGACTCCAAGAATGGTCGTATCCAGATAGAGTTGCAGTGGAGAACTTCATAA 1707 0.3902 MGFLSTIFGFFGFGFGILIGLVVGYFFFIYFQPTHVKDPEIKPLTEQDPVTLQKMLPEIPIWIKNPDSDRVDWLNKFIEYLWPYLDKAICKTAKNIAMPIIAEQIPKYKIDGVEFETLTLGSLPPTFQGMKVYVTDEKELIMEPSVKWAGNPNVTISVKAFGLKATVQVLDLQVFLAPRITLKPLVPTFPCFANIYVSLMEKPHVDFGLKVVGADLMSIPGIYRFVQELIKDQVANMYLWPKTLEVQILDPTKYVMHFSKIFFRDGTLLLTLVVIHVNVIENLRAMKRPVGILHVKVLRAMKLKKKDLLGASDPYVKLKMTGDKMPSEKTTVKYKNLNPEWNEEFNLSVKDTESQVLEINVYDWGQVRKHDKMGMNVIPLKAISPEEPKEFTLGLLKNMDPNDVHNVKSHGHIVVELTYKPFKEGELAKGFEEKHKVQKAPEGTPTGGGLLVVIVHEAEDVVGKYHTNPYVRVTLTGQEKKTKRIKRNRDPRWEEEFGFTLEEPPTNQRLHVEVISTSSRSLLHQKESLGYIDITLADVVLNKRINEKYHLIDSKNGRIQIELQWRTS 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0119 568 ProSiteProfiles C2 domain profile. 433 549 IPR000008 -
Lal9g0119 568 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 275 567 IPR045050 GO:0008289
Lal9g0119 568 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 255 IPR045050 GO:0008289
Lal9g0119 568 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 275 567 - -
Lal9g0119 568 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 255 - -
Lal9g0119 568 Gene3D C2 domain 286 443 IPR035892 -
Lal9g0119 568 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 449 566 IPR035892 -
Lal9g0119 568 CDD C2 293 395 - -
Lal9g0119 568 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 247 IPR039010 -
Lal9g0119 568 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Lal9g0119 568 SMART C2_3c 450 548 IPR000008 -
Lal9g0119 568 SMART C2_3c 292 392 IPR000008 -
Lal9g0119 568 Gene3D C2 domain 450 567 IPR035892 -
Lal9g0119 568 ProSiteProfiles C2 domain profile. 271 393 IPR000008 -
Lal9g0119 568 PRINTS C2 domain signature 308 320 IPR000008 -
Lal9g0119 568 PRINTS C2 domain signature 335 348 IPR000008 -
Lal9g0119 568 PRINTS C2 domain signature 357 365 IPR000008 -
Lal9g0119 568 Pfam C2 domain 291 390 IPR000008 -
Lal9g0119 568 Pfam C2 domain 450 551 IPR000008 -
Lal9g0119 568 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 286 400 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0119 Lal-Chr9 778027 783179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0119 289 547 Lipid Metabolism Gene Families AT3G61300 28.520 2.19e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0119 - - gmx:100781189 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0119 9 778027 783179 Lal9g0119 9 778027 783179 ECH
Lal2g0098 2 603222 613751 Lal9g0119 9 778027 783179 LSH