Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0035 ATGTTCCTATTTGGGTCGTTTAGTGAAGATGAAACCAAATCATTACTGCAAAAGCAGTCTTCTGGGTCTGGGGGAAAGGAAAAGCCTGCCGAGAAGAATCAACTGCAATTTGGTTCTCTGGGTTTGGTCACTGTTGATCCAAGTAACCTGCAAAAGTCACCAAAAGCACCAGAGAGTGCTTCTCCCTCTGATTCTCAGAAATGCAATGGAGTGAACAGTGCCAGCATTGGTGAAAATTTACCTGGAGTGTCAAAAACTACAAAAGAGAATGGCAGGATTACTAACTTCTCCCCTGGTCCCTCTAGTACCATTACTGTAAGCGAAGTAAAAGAGAACAATGTGCATCCAGTTACATTACTTGATGAAGATGGTAACTCCAACCATTTTTCAAATTTGAGCCTGGCTGTTTCTGGGGCTGAAAGCATGAATCATGCACATAAAGTTGGCAGTGGTCTTGATTCTTTATCAAAATTACCCGATCAAGACTCCAAAAAGGCACCTAATGGGCATATTGTTACACACAGTAGGGATATACTGCCTCGAGGCCTTATTAACTCTGGGAATTTATGCTTTGTTAATGCAACCATGCAGGCACTGTTGTCTTGTTCTCCTTTTGTTCAGCTTTTGCAGGAATTAAGGACTCGCAACATTCCTAAGGTTGGGTATCCCACATTGACTGCATTTGCTGAGTTTATCACTCAATTTGATTTGCCTAGCACGACAATATTAAAGAAGAAAGATACAGATACTTTTGAGACTGGAAGACCATTTCGCCCTGTTATGTTTGAAGGCGTTCTAAAAAAATTTACTCCTGATGTGCCAAATAGCATGTCAGGAAGACCAAGGCAGGAAGATGCTCAGGAATTTCTGAGCTTTGTAATGGATCAAATGCATGATGAATTACTAAAGCTTGAAGGTCAGTCTTCAAGTCTTACTGGTAGCAAATCTTCTCTAGTTTCCTCCGTGGAAGATGATGAATGGGAAACGGTGGGACCGAAGAATAAATCTGCTGTAACAAGGATTCAAAGTTTTGTACCGTCAGAGTTAAGTGATATTTTTGGAGGACAACTCAGAAGTTTGGTGAGAGCTAAAGGAAATAAACCTTCTGCCACTGTTCAACCTTACCTCTTGCTCCATCTTGACATTCATCCTGATACTGTCCACACGATTGAGGATGCATTTCACTTGTTTTCTACACCAGAAACTGTTGAAGGGTACCGAACATCCCTCACTGGAAAGGCTGGTGTTGTGACTGCAAGAAAAGATGTACACATACAGTCGCTTCCAAAAGTAATGATACTACACCTGATGCGTTTTGGTTATGGAAGCCAGGGAAGCACTAAGTTGCATAAGCCTGTGCACTTTCCTCTCGAGTTGACATTGGGTCGTGACTTGCTTGTTTCACCATCTAATGAGGGTCGCAAGTATGAACTTGTTGCTACAATTACTCATCATGGATGGGAATCTTCAAAGGGGCACTACACAGCTGATGCCCTATACCCCAATGGTCAGTGGCTACGATTTGATGATTCATCTGTCTTTGCTATTGGAGCAAATAAGGTGCTGCATGATCAGGCATATGTCCTTTTCTACAAGCGGATGTGA 1605 0.4218 MFLFGSFSEDETKSLLQKQSSGSGGKEKPAEKNQLQFGSLGLVTVDPSNLQKSPKAPESASPSDSQKCNGVNSASIGENLPGVSKTTKENGRITNFSPGPSSTITVSEVKENNVHPVTLLDEDGNSNHFSNLSLAVSGAESMNHAHKVGSGLDSLSKLPDQDSKKAPNGHIVTHSRDILPRGLINSGNLCFVNATMQALLSCSPFVQLLQELRTRNIPKVGYPTLTAFAEFITQFDLPSTTILKKKDTDTFETGRPFRPVMFEGVLKKFTPDVPNSMSGRPRQEDAQEFLSFVMDQMHDELLKLEGQSSSLTGSKSSLVSSVEDDEWETVGPKNKSAVTRIQSFVPSELSDIFGGQLRSLVRAKGNKPSATVQPYLLLHLDIHPDTVHTIEDAFHLFSTPETVEGYRTSLTGKAGVVTARKDVHIQSLPKVMILHLMRFGYGSQGSTKLHKPVHFPLELTLGRDLLVSPSNEGRKYELVATITHHGWESSKGHYTADALYPNGQWLRFDDSSVFAIGANKVLHDQAYVLFYKRM 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0035 534 MobiDBLite consensus disorder prediction 1 104 - -
Lal9g0035 534 Pfam Ubiquitin carboxyl-terminal hydrolase 182 531 IPR001394 GO:0004843|GO:0016579
Lal9g0035 534 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 534 - -
Lal9g0035 534 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 181 534 IPR028889 -
Lal9g0035 534 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 534 - -
Lal9g0035 534 SUPERFAMILY Cysteine proteinases 178 533 IPR038765 -
Lal9g0035 534 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 476 494 IPR018200 GO:0004843|GO:0006511
Lal9g0035 534 MobiDBLite consensus disorder prediction 37 104 - -
Lal9g0035 534 MobiDBLite consensus disorder prediction 10 27 - -
Lal9g0035 534 Gene3D Cysteine proteinases 169 534 - -
Lal9g0035 534 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 182 197 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0035 Lal-Chr9 233296 239454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0035 178 534 Miscellaneous Gene Families AT2G24640 28.493 1.01e-23 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0035 K11841 - gmx:100799656 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0047 1 360631 365603 Lal9g0035 9 233296 239454 LSH