Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0047 ATGAGTGACTCTAAGGTTTTCCTATTTGGGTCATTTAGGGAAGATGAATCAAAATCATTATATCAAAAGCAGTCTTCTGGGTCCAGGACCAAGGAAAAGCCTGCTGAGAAAAATCAGCTGCAATTTGGTTCTCTGGGTTTTGTCACTATTGAACCAAATAGCACGCTTAAGTCACCAAAAGCACCAGATAGTGCTTCTCCCTCTGATTCTCAGAAATGCAATGGAGTGATTGCCAGCATTATTAATAGTTTACCTGGAGAACTGGAAATTACAAAAGAGAATGGCAGCATTGCTAATTTCTCCCTTGGCCCCTCAAGTACCATTAGTGTAAACGAAGTTAAAGAAAATAATGTGCATCTTATTACATTACTTCATGATGATGGTAACTCCAACCAGTTTTCGAAATTGAGTGTAGCTAATTCTGAGGCTGAAAGCCTGAAGAATGTACATAAAGCTGGCAGTGGTCATGATTCTTCATCAAAATTATCTGACCAAGACTCCAAAAAGGAACCTAATGGGCATATTGTTGCACACATTAAGGATTTACTGCCTCGGGGCCTTATTAATTCGGGAAATCTATGCTTTGTCAATGCAACCATGCAGGCTCTCTTGTCTTGTTCTCCTTTTGTTCAGCTTTTGCAGGAACTAAGGACTCGCAACATTCCTAAGGTTGGCTATCCCACATTGACAGCGTTTTCTGAGTTCATAACTCAATTCTCCGTGCCAAGCGCAACACCGTTAAAGAAGAAAGATACCGATACTTTTGAGATTGGAAGGCCATTTCGCCCTGTTATGTTTGAAGGTGTTCTAAAATTTTTTGCTCCCGATGTGCTAAATAGCATGTTAGGAAGACCAAGGCAGGAAGATGCTCAGGAATTTCTGAGCTTTGTAATGGATCAAATGCATGATGAATTACTAAAGCTTAAAGGTCAGTCTTCAAGTCCAAATGGTAGCACATCTTCCCTAGTTTCATCCGTGGAAGATGATGAGTGGGAAACAGTGGGACCAAAGAATAAATCTGCTGTGACAAGGACCCAAAACTTTGCCCCATCAGAATTAAGTGCTATTTTTGGAGGACAGCTCCGGAGTTTGGTGAGAGCTAAAGGAAATAAAGCTTCTGCCACTGTTCAACCTTGCCTTTTGCTCCATCTCGACATTCATTCTGATGCTGTTCACACAATTGAGGATGCACTTCACTTATTTTCTACACCAGAAACTATTGAAGGGTACCGAACCTCACTCGCTGGAAAGGCTGGTGTTGGGACTGCCAGAAAATCTGTACACATACAGAAACTTCCAAAAATAATAATACTGCACCTGATGCGTTTTGGTTATGGAAGCCAGGGAAGCACCAAGCTGCTTAAGCTTGTTTCACCATCTAATGAGGGTCGTAAATATGAACTGGTTGCTACAATTACTCACCATGGATGGGAGGCTTCAAAGGGACACTACACAGCTGATGCTCTATACCCTAATGGTCAGTGGCTACGATTTGATGATGCATCTGTCTTCGCAGTTGGACCAAATAAAGTGTTGCATGATCAGGCATATCTTCTTTTCTACAACCAGATGTGA 1575 0.4159 MSDSKVFLFGSFREDESKSLYQKQSSGSRTKEKPAEKNQLQFGSLGFVTIEPNSTLKSPKAPDSASPSDSQKCNGVIASIINSLPGELEITKENGSIANFSLGPSSTISVNEVKENNVHLITLLHDDGNSNQFSKLSVANSEAESLKNVHKAGSGHDSSSKLSDQDSKKEPNGHIVAHIKDLLPRGLINSGNLCFVNATMQALLSCSPFVQLLQELRTRNIPKVGYPTLTAFSEFITQFSVPSATPLKKKDTDTFEIGRPFRPVMFEGVLKFFAPDVLNSMLGRPRQEDAQEFLSFVMDQMHDELLKLKGQSSSPNGSTSSLVSSVEDDEWETVGPKNKSAVTRTQNFAPSELSAIFGGQLRSLVRAKGNKASATVQPCLLLHLDIHSDAVHTIEDALHLFSTPETIEGYRTSLAGKAGVGTARKSVHIQKLPKIIILHLMRFGYGSQGSTKLLKLVSPSNEGRKYELVATITHHGWEASKGHYTADALYPNGQWLRFDDASVFAVGPNKVLHDQAYLLFYNQM 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0047 524 MobiDBLite consensus disorder prediction 308 338 - -
Lal1g0047 524 MobiDBLite consensus disorder prediction 308 327 - -
Lal1g0047 524 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 185 524 IPR028889 -
Lal1g0047 524 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 466 484 IPR018200 GO:0004843|GO:0006511
Lal1g0047 524 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 524 - -
Lal1g0047 524 Pfam Ubiquitin carboxyl-terminal hydrolase 186 521 IPR001394 GO:0004843|GO:0016579
Lal1g0047 524 MobiDBLite consensus disorder prediction 17 38 - -
Lal1g0047 524 Gene3D Cysteine proteinases 172 523 - -
Lal1g0047 524 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 524 - -
Lal1g0047 524 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 186 201 IPR018200 GO:0004843|GO:0006511
Lal1g0047 524 SUPERFAMILY Cysteine proteinases 184 522 IPR038765 -
Lal1g0047 524 MobiDBLite consensus disorder prediction 145 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0047 Lal-Chr1 360631 365603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0047 182 524 Miscellaneous Gene Families AT2G24640 27.019 5.03e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0047 K11841 - gmx:100799656 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0047 1 360631 365603 Lal9g0035 9 233296 239454 LSH