Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0034 ATGAATGGTTATGAAGCAACAAGGATTGTGTTTTCAAGGATCCAAAACTTTGACCCTGAAAATGCATCAAAAATCATGGGTATGCTTCTGATTCAAGACCATGGTGAGAAAGAAATGATTAGGTTAGCATTTGGTCCAGAAGCCCTAGTTCATTCAGTGATTGTTAAAGCTAGAAAGGACTTGGGATTACCGTCTAACACTTCACCTACACCCTCTACTCCTCCATCACCATCTCCATTCCTTTCAAGGCAAAGTTCAACCACTTCAGCTTCTAGGCTCAGTGGAATTAACCTTCCACCAGCTTTAACTATTCCAAACTCAACATCTTCTAACTCACCTTCTTGGGCTACTATGTCCGAGCTTAACACCCCTGATGAGTTAATCGTGAGTCCTAATAATTTTGTTGTTGGGTCTAATAACACTTCATCATCTTCCTTACCCTTTTATCATCATGCTAATGGAGGAGTTTCAGATCCAATTGATGAGTTCCAACTTCAAGATCAGCTTTCTTTCTTGAATGATGGTTCTGATCCTCATAAGAACCATGATTTGTTTTACCATAGTCACTCTGACTTGTCTTCAAGTCCAACTAGTGGTGCTGACCCTAATCTTTTCCCTTCATATGGTTGGGGAGGAGGGGCTCTTCATAGAAGGAGTTGTTCTGTTAATGATGCTTGCTTGGGTTCTGAGGACCCTAATTCAGGGTTTGGGTGGAAGCCTTGTCTTTACTTTGCTAGAGGCTACTGCAAAAATGGTACTAGTTGTAGGTTCCTTCATGGAGGAGGAGGAATTGGAGATGCTGATATTGCAATGATTGGTTCCCCTAGCAAGATTGAGATGATGGATCAATGCCATGAGCTTCTCAGATCTAAGACTGCTCAACACCAAAGACTTGCTGCTGCTTCTCAGTTCATGGCATCTTCTTTTCCATACTCACCAAAGGACATGAATTTGCTATTACAGCAGCAACAAAATGATTCTCCAAGAGGAGCAGTTGAAGCTCTTATGATGAATGAAGAGTTGAACAAGTTCGGAAGGTGTAGGCTTGAAAGGAATGATTTTTCTTTTACCAGTCCTGAAATGGTTAATCCGGCTTCAAGGCAGATCTACTTGACTTTTCCCGCAGATAGCACTTTCAGGGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGTCCCGTTCAAGATGTGCGGATCCCGTACCAGCAGAAGCGTATGTTTGGATTTGTTACCTTTGTTTATCCGGAGACTGTGAAGCTCATACTATCTAAAGGGAACCCTCATTTTGTGTGTGATGCTAGAGTGCTTGTTAAGCCTTACAAGGAGAAAGGCAAAGTCCTAGAAAAGAAGCAACAGCAACAGGTAGATAGGGGAGATTTTCCACCTTGTGGTACTCCTCCTGGACTAGGTGCTAGAGACCATTTTGATATCCAACTTGGAAGTGGAATGTTTTACAATTCTCAAGACATGCTGTGGAGGAGGAAGTTGGAGGAGCAAGCTGATTTTCAGCAAGTTCTTGAGCTCCAAAGTAGAAGGTTAATGGGTCTGCAACTTCTTGACATCAAGAAGCAACACCACCGTGCACTCTCAACCGGAAGTCCAATCCCTTCCCTTACTCACTCTCCTAGCATGTTCAATCAAAACCTTGTTTTCCCCTCATTTCACAGCAGCTCAGAGACCTCGAATGATAGTGGTTCAAGTTCAGCTCCAGCTAGTAGTAATGCATCAGTGGACACTTCCTTGCTAAAGGAAGTGATTGGTAATGGAGAGAATGGATATAATGATGGCAATGGCAAGAGCTCTAGTCATGAAGACTGTGATTTGCAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCTCCTACTAAAGCTGATGCTGGTGACTGCATGGCTGCCTTCTCCAATGGACCTATTGAGGCCATTGATTCAGATGCATCAGCTGCATCTGCCAACTCTAAATTTGGTACCACCACATTGCTCCCATCACCATCTGCTTTGGACACGGGCTCTTTCCAATCCTTTAATTGCCAAATTCCAAGGTTCTCTTCTGGCCATGGAACTATTGGCATGTTTGCCGGCACAGGCGGACCGATTGGCATTTAG 2112 0.4328 MNGYEATRIVFSRIQNFDPENASKIMGMLLIQDHGEKEMIRLAFGPEALVHSVIVKARKDLGLPSNTSPTPSTPPSPSPFLSRQSSTTSASRLSGINLPPALTIPNSTSSNSPSWATMSELNTPDELIVSPNNFVVGSNNTSSSSLPFYHHANGGVSDPIDEFQLQDQLSFLNDGSDPHKNHDLFYHSHSDLSSSPTSGADPNLFPSYGWGGGALHRRSCSVNDACLGSEDPNSGFGWKPCLYFARGYCKNGTSCRFLHGGGGIGDADIAMIGSPSKIEMMDQCHELLRSKTAQHQRLAAASQFMASSFPYSPKDMNLLLQQQQNDSPRGAVEALMMNEELNKFGRCRLERNDFSFTSPEMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVLEKKQQQQVDRGDFPPCGTPPGLGARDHFDIQLGSGMFYNSQDMLWRRKLEEQADFQQVLELQSRRLMGLQLLDIKKQHHRALSTGSPIPSLTHSPSMFNQNLVFPSFHSSSETSNDSGSSSAPASSNASVDTSLLKEVIGNGENGYNDGNGKSSSHEDCDLQECLEHNLPDSPFASPTKADAGDCMAAFSNGPIEAIDSDASAASANSKFGTTTLLPSPSALDTGSFQSFNCQIPRFSSGHGTIGMFAGTGGPIGI 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0034 703 Gene3D - 229 303 - -
Lal9g0034 703 SUPERFAMILY RNA-binding domain, RBD 379 457 IPR035979 GO:0003676
Lal9g0034 703 ProSiteProfiles Zinc finger C3H1-type profile. 235 262 IPR000571 GO:0046872
Lal9g0034 703 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 240 260 IPR000571 GO:0046872
Lal9g0034 703 MobiDBLite consensus disorder prediction 62 116 - -
Lal9g0034 703 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 367 454 IPR000504 GO:0003723
Lal9g0034 703 SMART rrm1_1 368 438 IPR000504 GO:0003723
Lal9g0034 703 MobiDBLite consensus disorder prediction 555 577 - -
Lal9g0034 703 MobiDBLite consensus disorder prediction 586 605 - -
Lal9g0034 703 CDD RRM_AtC3H46_like 369 438 IPR034365 -
Lal9g0034 703 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 379 424 IPR000504 GO:0003723
Lal9g0034 703 Gene3D - 363 460 IPR012677 -
Lal9g0034 703 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 691 - -
Lal9g0034 703 SMART c3hfinal6 237 261 IPR000571 GO:0046872
Lal9g0034 703 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 691 - -
Lal9g0034 703 MobiDBLite consensus disorder prediction 79 116 - -
Lal9g0034 703 SUPERFAMILY CCCH zinc finger 238 260 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0034 Lal-Chr9 223691 228405 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0034 - - gmx:100801341 1033.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0020 2 136174 140653 Lal9g0034 9 223691 228405 LSH