Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0020 ATGGATGGGTATGAAGCCACAAGGACTGTGTTTTCAAGGATCCAAAACATGGACCCTGAAAATGCATCAAAAATCATGGGTATGCTTCTGATTCAAGACCATGGTGAGAAAGAAATGATAAGGCTGGCATTTGGTCCGGAAGCCCTAGTTCATTCAGTGATTGTTAAAGCTAAGAAGGACTTAGGATTACGTTCTAACTCTCCACCTCCTACTTCTACTCCTACTCCTCCTCCTCCATCATCATCATCATCATCATCATCATCATCTTCATTTCTTTCAAGGCAAAGTTCCATACCTTCAGCTTCTAGGCTTGGTGGGGTTAAACTTCCACCTGCTTTAACTATTCCAAACTCAACATCTTCTAACTCACCTTCTTGGACTACTATGTCTGACCTTAACAACTCTGATGAGTTAATCATGAGTCCTAATAATTTGGCTGTTGCTTCTAATAACACTCCATCATCATCTTCCTTACCCTTTTATCATCATGCAAACGGAGGAGGGTCAGATCCAATTGATGAGTCCCAACTTCAAGACCACCTTTCTTTCTTGAATGATGGTTCTCCTCACAAGAACCAAGATTTGTTTTACCCTCATCATCACTCTGACTTGTCATCAAGTCCAACTGACCCTAATCTTTTCCCTTCATATGGTTGGGGAGGGTCTCTTCATAGAAGGAGCTGTTCAGTTAACGATGCTTGTTTGGTGTCTGAGGACCCTAATTCAGGTTTTGGTTGGAAGCCATGTCTTTACTTTGCTAGAGGGTACTGCAAAAATGGTACTACTTGTAGGTTCCTTCATGGAGGAGGGGGAACAGTTGGAGATGCTGATGCTGCAATGGTTGGTTCCCCTAGTAGGATTGAGATGATGGATGAGCTTCTCAGATCTAAGACTGCCCAACAGCAAAGACTTGCTGCTGCTTCTCAACTCATGGCATCTTCTTTTCCGTACTCACCAAAGGGTATGAATTTCCTATTACAGCAGCAACAAAATGATTCTCCAAGAGGGGCAGTTGCAGCTCTTATGATGAATGAAGAGTTGCACAAGTTTGGAAGATCCAGGCTTGAAAGGAATGATTTTTGTTTGAACAGTCCTGGGATAGTTAACCCAGCATCAAGGCAGATCTACTTGACTTTTCCAGCTGATAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGTCCTGTTCAGGATGTGAGGATCCCATACCAGCAGAAGCGTATGTTTGGATTTGTCACCTTTGTTTATCCTGAGACAGTGAAGCTCATTCTATCCAAAGGGAACCCTCATTTTGTATGTGATGCTAGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAAGAAGCAACAGCAACAAGTAGATAGGGGAGACTTTTCACCTTGTGGTACTCCTACTGGACTAGATGCTAGAGACCAATTTGATCTCCAACTAGGAGGCAGAATGTTTTACAATACTCAAGACATGTTGTGGAGGAGGAAGTTGGAAGAGCAAGCTGATTTTCAGCAAGCTCTTGAGCTCCAAAGTAAAAGGTTAATGGGTCTGCAACTTCTTGATCTCAAGAAGCAACACCACCGCACACTTTCAACAGGAAGTCCAATTCCTTCCCCTACTCACTCTCCTAGTATGTTTAATCAAAACATTGTTTTTCCTTCATTTCACAGCAGCTCAGAAACCCCACAGGATAATGGTTCTTGTTCAGCTCCAGCTAGTAGTACGGTATCAGTGAACACTTTTATTGGCAAGGAGGTGGTTGGTAATGGGGAGAATGGATATAATGATGGCAATGGCAAAAGCTCAAGTCATGAAGAGTGTGATTTGCATGAATGTTTGGAGCATAATCTCCCAGATAGCCCTTTTGCTTCCCCTACTAAAGCTGCTGCTGGTAGTGACTTCATGGCTGAGGCCATTCATTCAGATGCCTTGGCTGCATCTGCCAACTCTAAATTTGGTACCAGCACATTACTTCAATCACCATCTGCTCTGGACATGGGCTCTTTCAAATCCTTTAATTGCCAAATTCCAAGGTTCTCTTCTGGCCCTGGAACTATTGGCATGGTATCTGGTACGGGCGAACCGATTGGCATTTAG 2112 0.4323 MDGYEATRTVFSRIQNMDPENASKIMGMLLIQDHGEKEMIRLAFGPEALVHSVIVKAKKDLGLRSNSPPPTSTPTPPPPSSSSSSSSSSSFLSRQSSIPSASRLGGVKLPPALTIPNSTSSNSPSWTTMSDLNNSDELIMSPNNLAVASNNTPSSSSLPFYHHANGGGSDPIDESQLQDHLSFLNDGSPHKNQDLFYPHHHSDLSSSPTDPNLFPSYGWGGSLHRRSCSVNDACLVSEDPNSGFGWKPCLYFARGYCKNGTTCRFLHGGGGTVGDADAAMVGSPSRIEMMDELLRSKTAQQQRLAAASQLMASSFPYSPKGMNFLLQQQQNDSPRGAVAALMMNEELHKFGRSRLERNDFCLNSPGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQQQVDRGDFSPCGTPTGLDARDQFDLQLGGRMFYNTQDMLWRRKLEEQADFQQALELQSKRLMGLQLLDLKKQHHRTLSTGSPIPSPTHSPSMFNQNIVFPSFHSSSETPQDNGSCSAPASSTVSVNTFIGKEVVGNGENGYNDGNGKSSSHEECDLHECLEHNLPDSPFASPTKAAAGSDFMAEAIHSDALAASANSKFGTSTLLQSPSALDMGSFKSFNCQIPRFSSGPGTIGMVSGTGEPIGI 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0020 703 MobiDBLite consensus disorder prediction 451 475 - -
Lal2g0020 703 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 385 430 IPR000504 GO:0003723
Lal2g0020 703 ProSiteProfiles Zinc finger C3H1-type profile. 243 270 IPR000571 GO:0046872
Lal2g0020 703 SUPERFAMILY CCCH zinc finger 246 268 IPR036855 GO:0046872
Lal2g0020 703 MobiDBLite consensus disorder prediction 113 137 - -
Lal2g0020 703 CDD RRM_AtC3H46_like 375 444 IPR034365 -
Lal2g0020 703 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 373 449 IPR000504 GO:0003723
Lal2g0020 703 Gene3D - 372 469 IPR012677 -
Lal2g0020 703 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 688 - -
Lal2g0020 703 MobiDBLite consensus disorder prediction 82 102 - -
Lal2g0020 703 MobiDBLite consensus disorder prediction 61 137 - -
Lal2g0020 703 SUPERFAMILY RNA-binding domain, RBD 385 463 IPR035979 GO:0003676
Lal2g0020 703 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 248 268 IPR000571 GO:0046872
Lal2g0020 703 SMART rrm1_1 374 444 IPR000504 GO:0003723
Lal2g0020 703 SMART c3hfinal6 245 269 IPR000571 GO:0046872
Lal2g0020 703 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 688 - -
Lal2g0020 703 Gene3D - 236 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0020 Lal-Chr2 136174 140653 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0020 - - gmx:100801341 1006.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0020 2 136174 140653 Lal9g0034 9 223691 228405 LSH