Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1539 ATGAGTAGGGCATCAACACGAAGTAAAAATAAAAGGCAGAAACCGGGGGATGATGGTGCCTGTAATTCTGAAATATGGAGGAAAATCCATCAAACTGGTGCGGTGACTGAAGATGATATGAATAAATTGTATATGATTTGGAAGCCGGTCTGTTCAGGCTGTCGTGTCAATACCAAAGACAACCCAAATTGCTTCTGTGCATTGGTTCCACCTCCAAATGGAACCCGGAAGTCTGGCTTATGGATCAAGGTGTCAGATTTTATTGAAAGTCTTGGTCCTGACCCAACCAAGGATCTCCGTGCTTCTGCTAATTCACCTGCAGGCCTAACAAATCTTGGTGCAACATGCTATGCCAACAGTATACTCCAGTGTTTGTACATGAATAAATCATTCCGAGAAGGCATATTTTCTGTAGAACAAGATGTTTTACAACAACAACCTGTGTTAGATCAACTGACTCGCCTTTTTGTACAGTTGCATATCAGTAAAATGTCTTTCATAGATTCTTCTCCATTTGTAAAAACACTGGAGTTAGACAATGGAGTTCAGCAAGACAGTCACGAGTTCCTGACATTGCTTCTGTCATTGCTTGAGCGTTGCCTGAGCCATTCCAAAATTGCAAAGGCTAGAACGATAGTTCAAGATCTTTTCCGGGGAAGTGTGTCACACTTGACAACGTGTTCACAATGTGGAAGAGACTCCGAAGCTTCTTCCAAAAAAGAAGACTTCTGTGAGTTGGAGTTGAATGTCAAGGGGTTGAAAAGTTTAGATGAGAGCCTAGATGATTACCTAAGTGTTGAAGAGCTTCATGGAGACAATCAATATTTTTGTGAGTCATGTAAAACAAGAGTTGATGCTACCCGCAGCATCAAACTGTGTACATTACCTGATGTGCTTAATTTTCATCTTAAGCGTTATGTCTTCCTTCCAAAGACTACAACGAAGAAGAAAATTAGTTCTGCATTTTCATTTCCGGCTGAACTTGATATGCGCCATAGATTGTCTGAGCCGTCTCGGTTTGAATTGGTATATGATCTGTCAGCTGTACTGATTCACAAGGGAAGTGCTGCTAATAGTGGTCATTACATTGCTCACATCAAGGATGAAAACACTGGGCAATGGTGGGAATTTGATGACGAGCATGTCACTAACTTGGGTCGTCATCCATTTGGGGAAGGAGCTTCTACATCTAAATCTGTTAAGGCTGATATAGCTCATTCTAATTGCTCAGAAACCAGGATAGCTGACAGTAACGGAAATGGTTTAGATGTCTCTCATTCACAACGTTTGCATGTGGAGACATTTTCATCTAGTGATGCATACATGTTGATGTACCATCTTAAACATACCAAAAATGTTGGTGAAACAGGGAGCATGATTTGTGGTGCAAACCATAAAGAAAGAGATGTTGATGCAGCTACTTTACAATCAAATGCTCATCTTCCTTCTCATCTTTGTGAAGAGATTGAAAATTTCAATGCATCATATCTTGATGCTTGTAAGAAGTACAGTGATAAGAAAGAGACAGAATTGAATTGTATCAATGAGAGGAGACAGGAAGTTCGATCTGTTCTAGCTGAAGCTCCTGTTAAACTACTGGAGCAATCGTTTTTTTGGATTTATAGTGACTGGCTTCGCCAGTGGGCTGACAACATAATTCCAACTGCCCTTGACAACACATCAATCCAATGTTCACATGGGAAAGTCCCAGTATCAAAGGTTACCTCAATGAAGCGATTGTCTTCTAAAGCATGGGATAAGTTATTCTCCAAGTATGGTGGGGGCCCAAAATTGTCTCATGATGACCACTGTTGGGATTGTCTGATTGATGGGGCCCAGAATGTTGTGTCAGCTGACACCTATCGGGGTCAAAGAGAATCACTGAAGCAACTTGCACGAGATATTCTTGATGGAAACTGTCAAGATGGAAAGTACTATGTATCCAGACCATGGTTGCTGCAATGGTGGAAAAGAAAAGTCCTCGATGCTCCATCTGAAGCTGATGCTGGACCAACAACAGCCATTAGTTGTCCACACGGGCAACTTATGCCTGAGCAAGCTGCTGGTGCTAAGCGGGTCCTTGTTCCTGAGGGTTTCTGGTCCTTCTTATATGAAGATGCCATTTCTGTACAATTTGATGATCCTTTGGATTGCCCTACTTTTCCTTTAGATTCCAGAGAATGTTCCCAATGCTGTAATGAGTTATCTGAAGTGACTTGTTTGGAGGACTCTTTGAGATTGGTGAAACAAAGGCATCGTCAGAATCATGAGAAACTATTCCTGGGAAAAAGTATGCCACTCTCTATGCATTGCAAGTATTTCTTAGTTCCTTCTTCGTGGATTTCAAAATGGAGAAATTACATTAATCCAACTGTCAAGAATTCAGATAAACCTGAAACTTTAGATGCAGTAATTGATTCGTTGATGTGTGAAAAGCACTCACAACTCGGTGAAAGGCCTCCTGAACTGGTTTTCAGACGCAATACTATATCCACAAGAGAGTCTGCTGAAGGTGGATTAATCATCATCTCTGAGAATGATTGGAAATTACTTTGTGAAGAATGGGGCGGTACTGAAACCAAAGGAATATCTGCAATAATTGTTGATATTAATGAATCGGAAAATGCTGTGGCTGGATCCTGCAAAGAGATGCCAATATGTGAGGATCATTTGGTTAATGGAAGTGGGAATGGACAAGTTGTAATTAAGACTTACCCAGAGGTTTGTGAAAGTTGCGTTGGAGAAAGAGAAAGCTGCGAGCTAATGCGGAAACTAAATTATTGCAATGAGGAGATATGCGTAATTCTGGTTCGTGGAAAGGAGGTCCCTAAATCCATCTTGGAGGCTTCAAAGGGCTTTGTTGAAACGGATCGGCGGGTTTCCAAACGTGCTCGGAAGATTAAGAATGGGAGTTCAACTAGTCTTAAAGTTTCCGCTTCAACAACGATTTACCAGCTGAAAATGATGATATGGGAATCGGTCGGGGTTGTCAAGGAAAATCAGATACTGCAAAAAGGTGATAGAACAATTGACATTGATAGTGAAAGTGCTACACTTGTGGATGTAAACATATTTGCTGGAGATCAGATTATAGTGAGGGACTCTGAGATCCATGAAAATAGAGATATTGCTGATGAACTTTTTGATGAAAAAATGGATACACAGCATACAGAGGAAGGTTTTCGTGGAACACTTTTGACATCAAATATTTCATCTCAAGTTGTTTAG 3228 0.4083 MSRASTRSKNKRQKPGDDGACNSEIWRKIHQTGAVTEDDMNKLYMIWKPVCSGCRVNTKDNPNCFCALVPPPNGTRKSGLWIKVSDFIESLGPDPTKDLRASANSPAGLTNLGATCYANSILQCLYMNKSFREGIFSVEQDVLQQQPVLDQLTRLFVQLHISKMSFIDSSPFVKTLELDNGVQQDSHEFLTLLLSLLERCLSHSKIAKARTIVQDLFRGSVSHLTTCSQCGRDSEASSKKEDFCELELNVKGLKSLDESLDDYLSVEELHGDNQYFCESCKTRVDATRSIKLCTLPDVLNFHLKRYVFLPKTTTKKKISSAFSFPAELDMRHRLSEPSRFELVYDLSAVLIHKGSAANSGHYIAHIKDENTGQWWEFDDEHVTNLGRHPFGEGASTSKSVKADIAHSNCSETRIADSNGNGLDVSHSQRLHVETFSSSDAYMLMYHLKHTKNVGETGSMICGANHKERDVDAATLQSNAHLPSHLCEEIENFNASYLDACKKYSDKKETELNCINERRQEVRSVLAEAPVKLLEQSFFWIYSDWLRQWADNIIPTALDNTSIQCSHGKVPVSKVTSMKRLSSKAWDKLFSKYGGGPKLSHDDHCWDCLIDGAQNVVSADTYRGQRESLKQLARDILDGNCQDGKYYVSRPWLLQWWKRKVLDAPSEADAGPTTAISCPHGQLMPEQAAGAKRVLVPEGFWSFLYEDAISVQFDDPLDCPTFPLDSRECSQCCNELSEVTCLEDSLRLVKQRHRQNHEKLFLGKSMPLSMHCKYFLVPSSWISKWRNYINPTVKNSDKPETLDAVIDSLMCEKHSQLGERPPELVFRRNTISTRESAEGGLIIISENDWKLLCEEWGGTETKGISAIIVDINESENAVAGSCKEMPICEDHLVNGSGNGQVVIKTYPEVCESCVGERESCELMRKLNYCNEEICVILVRGKEVPKSILEASKGFVETDRRVSKRARKIKNGSSTSLKVSASTTIYQLKMMIWESVGVVKENQILQKGDRTIDIDSESATLVDVNIFAGDQIIVRDSEIHENRDIADELFDEKMDTQHTEEGFRGTLLTSNISSQVV 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1539 1075 Pfam Ubiquitin carboxyl-terminal hydrolase 108 445 IPR001394 GO:0004843|GO:0016579
Lal8g1539 1075 SUPERFAMILY DUSP-like 516 604 IPR035927 -
Lal8g1539 1075 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 1045 - -
Lal8g1539 1075 SMART dusp 530 601 IPR006615 GO:0004843
Lal8g1539 1075 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 2 1045 - -
Lal8g1539 1075 CDD Ubl_USP48 965 1068 IPR044743 GO:0004197|GO:0004843|GO:0016579
Lal8g1539 1075 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Lal8g1539 1075 Gene3D - 744 865 IPR035927 -
Lal8g1539 1075 ProSiteProfiles DUSP domain profile. 512 604 IPR006615 GO:0004843
Lal8g1539 1075 CDD Peptidase_C19L 108 445 IPR033841 GO:0004843
Lal8g1539 1075 ProSiteProfiles DUSP domain profile. 619 721 IPR006615 GO:0004843
Lal8g1539 1075 SUPERFAMILY Cysteine proteinases 105 445 IPR038765 -
Lal8g1539 1075 Gene3D - 965 1040 - -
Lal8g1539 1075 SUPERFAMILY Ubiquitin-like 967 1051 IPR029071 -
Lal8g1539 1075 MobiDBLite consensus disorder prediction 1 22 - -
Lal8g1539 1075 Gene3D Cysteine proteinases 94 448 - -
Lal8g1539 1075 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 448 IPR028889 -
Lal8g1539 1075 ProSiteProfiles DUSP domain profile. 747 867 IPR006615 GO:0004843
Lal8g1539 1075 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1539 Lal-Chr8 19710851 19722162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1539 105 385 Miscellaneous Gene Families AT4G31670 30.233 4.48e-27 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1539 - K11858 gmx:100795556 1802.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1539 8 19710851 19722162 Lal17g0264 17 1644379 1652679 PCT
Lal17g0264 17 1644379 1652679 Lal8g1539 8 19710851 19722162 PCT