Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0264 ATGAGTAGACCTACAACACGGAGTAAAAATAAAAGACAGAGACAAGGGGATGATGGTGCTGGCACTTCAGAAATATGGAGGAAAATTAATGAAACGGGTGTGGTTACTGAAGACGATATGAATCAATTGTATATGATTTGGAAGCCAATTTGTTCAGGCTGCCGTGTTAATACCAAAGATAACCCTAATTGCTTCTGTGCATTGATTCCACCTCAAAATGGAGCCCGGAAGTCTGGCTTATGGCAGAAGATTACAGATTTAGTTGAAAGTCTTGGCCCTGACCCAAGCACTGAACTTCGTGCTTCTGCCAATTCTCCAGCTGGTCTGACTAATCTTGGTGCCACATGCTATGCAAACAGTATACTCCAATGCTTGTACATGAATAGATCTTTCCGAGAAGGCATATTTTCTGTAGAACCAGATGTTTTACAACAACAACCAGTGTTAGATCAGCTGGCTAGACTTTTTGCGCAGTTGCATGTTAGTAAAAGGGCTTTTATAGATTCTCTTCCATTTATAAAAACACTGGAGTTAGATAATGGAGTTCAGCAGGATTCACACGAGTTCCTGACATTGCTTCTATCATTACTTGAGCGTTATTTGAGCCATTCCAAAGTTTCCAAGGCCAGAACAATAGTTCAAGATCTTTTCCGGGGAAGTGTCTCTCATGTGACAACGTGCTCACAATGTGGAAGGGATTCTGAAGCTTCTTCCAAAATGGAGGATTTCTATGAGTTGGAGTTGAATATCAAGGGATTGAAAAGCTTAGATGACAGTCTAAATGATTACCTCTCTGTTGAAAAGCTCCAAGGAGACAATCAGTATTTTTGCGAGTCGTGTAAAACAAGAGTCGATGCCAGTCGCAGCATCAAGCTCCGTACATTACCTGATGTACTTAATTTTCAACTGAAACGCTGTGTCTTCCTTCCAAAGACTACAACGAAGAAGAAAATCACTTCTTCATTTTCATTTCCCGCTGAACTCAACATGCAGCATAGGTTGTCTGAGTTGTCTCAGTTTGATTTGGTATATGACTTATCAGCCGTACTGATTCACAAGGGAACTGGTGTTAATAGTGGCCATTACATTGCTCATATTAAGGATGAGAATACTGGGCAATGGTGGGAGTTTGATGATGAACAGGTCACTGATTTGGGTCGTCATCCGTTTGGTGAAGGAACTTCAAGTTCTACTACTAAATCTGTTACGACTGATGCAGCTTATTCTGAAGCGAAGTTTGCTGACAGCAATGGAAATGGTTTAGATGCCACTCATGTACATTCTTCCCTTGTGGAGACATTTTCATCTAGTGATGCATATATGTTGATGTACCATCTTAAACATACAAAAGGTGTTGGTGAAAATGGCTATGATAAAGTTTCTGGTACTAACCATAAAGAAAAAAAGGATGTTGCAGTTGCTGCAAAATATGGTTCTCTTCCTTCTCATCTTGATGAAGAGATTCAAAATTTCAATGCCTCATATGTTGATTCATGTGAGAAGTACAATCGTAAGAAAAAGATAGAACTGAGTCGTATTAATGATAGGAAACAAGAAGTTCGATCTGTTTTAGCTGAAGCTCCTGTTTCATCATTGGAGCGACCATTTTATTGGATTTCTAGTGACTGGCTTCGCCACTGGGCTGACAATGTTACTCCAACTTCTCTTGACAACACATCAATCCAATGTTCACATGGCAAAGTCTCAGTTTCAAAAGTTACCTCAATGAAACGGTTGTCTGCTAAAGCATGGGATAAGTTGTTCCCTAAGTATGGTGAGGGGCCAGCACTGTCACATAATGATCACTGTTTGGATTGTCTGATTCACGGGGCTCATACAGTGGTGTCAGCTGACACCTATCGGGGTAGAAGAGAATCAATGAAGTTACTTGCCCGGGATATTCTAGATGGAAACTGCATAGACGATGGAAAGTATTACATTTCCAGAGCATGGTTGCAGCAGTGGTTGAAAAGAAAAGTCCTTGATGCTCCAACTGAAGTTGATGCTGGACCAACAGCAGCCATTAGTTGTCCGCATGGGCAACTGAAGCCCGAGCAAGCTTCTGGTGCTAAGCGTGTCCTTATTCCTGAGAATTTTTGGCTCTTCTTATACGAAGATGCTGTTTCTGTAAAACCTGATGAACCTTTGGGTGGCCCGACTTTTCCTTCGGACTCCAGAGAGTGTTTCCAATGCAGTAGTGAATTATCGGAAGTAGCATCCTTGGAGGACTCCTTAAGATTAGTTAAACAAAAGCAGCGTCAGAATCATGAAAAATTACTCCTGACTAAAAGTATGCCACTCTCTGTGCATTGCAAGTATTTTTTGGTGCCGTCTTCATGGGTATCAAAATGGAGAAACTATGTTAGTCCAACCCTGAAGAGTTCAGATAAACCTGAAACTTTAGATGGGGTAATTGATTCAGTGATATGTGAAAAGCACTCACAACTTGTTGAAAGACCTCCTGAACTGGTTTTCAGACGTGGTGCTATAGTCCAGAGAGAGTCTTCTGCAGGTGGCTTGACCATCATATCTGAGAATGATTGGAAATGTTTCTGTGAAGAATGGAGTGGTGTTATGACTAAAGGAATATCTGCAACACTAGAAACTATTAACGATTCAGAGAATGTTTTGACCGCATCCAATGAAGAGATGCAGATATGTGACAATCAGTTGGGCACTGGGGATAAAGTGAATAATGAAAATGGGTCTGGACAAATTTTGATTAAGACTTGTCCAGAGGTTTGCAAAAGTTGTATTGGAGAAAAAGAAAGCTGTGAGTTAATGCAGAAACTTAACTATTGCAATGAGAACATATGTGTAATTCTTATTCGTGGTAAGGAGGTGCCTAGGTCTATCTTGGAGGCTTCAAAGGGATCTGCTGAAACAGATCGGCGGGTTTCAAAGCGTTCCAAGAAAACTAAAAATGGGAGTTCAATTAGTCTTAAAGTTTCTGCTTCAACGACTTTATACCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTATCAGAGAAAACCAGATACTACAGAAAGGTGATAAGACAATTGAGATTGATGATGAATATACTACCCTTGCGGATGTTAACATTTTTGCTGGAGATCAGATAATAGTAAGGGACTCCGAGATTCATGAAAATCGAGATATTGCTGATGAGCTCTACGATGAGAAAATGGATGTGCAACATACTGAGGAAGGGTTTCGTGGTACACTTTTGACAGCAAATGTTTCATCCCAGGTTGTTTAA 3246 0.4054 MSRPTTRSKNKRQRQGDDGAGTSEIWRKINETGVVTEDDMNQLYMIWKPICSGCRVNTKDNPNCFCALIPPQNGARKSGLWQKITDLVESLGPDPSTELRASANSPAGLTNLGATCYANSILQCLYMNRSFREGIFSVEPDVLQQQPVLDQLARLFAQLHVSKRAFIDSLPFIKTLELDNGVQQDSHEFLTLLLSLLERYLSHSKVSKARTIVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNIKGLKSLDDSLNDYLSVEKLQGDNQYFCESCKTRVDASRSIKLRTLPDVLNFQLKRCVFLPKTTTKKKITSSFSFPAELNMQHRLSELSQFDLVYDLSAVLIHKGTGVNSGHYIAHIKDENTGQWWEFDDEQVTDLGRHPFGEGTSSSTTKSVTTDAAYSEAKFADSNGNGLDATHVHSSLVETFSSSDAYMLMYHLKHTKGVGENGYDKVSGTNHKEKKDVAVAAKYGSLPSHLDEEIQNFNASYVDSCEKYNRKKKIELSRINDRKQEVRSVLAEAPVSSLERPFYWISSDWLRHWADNVTPTSLDNTSIQCSHGKVSVSKVTSMKRLSAKAWDKLFPKYGEGPALSHNDHCLDCLIHGAHTVVSADTYRGRRESMKLLARDILDGNCIDDGKYYISRAWLQQWLKRKVLDAPTEVDAGPTAAISCPHGQLKPEQASGAKRVLIPENFWLFLYEDAVSVKPDEPLGGPTFPSDSRECFQCSSELSEVASLEDSLRLVKQKQRQNHEKLLLTKSMPLSVHCKYFLVPSSWVSKWRNYVSPTLKSSDKPETLDGVIDSVICEKHSQLVERPPELVFRRGAIVQRESSAGGLTIISENDWKCFCEEWSGVMTKGISATLETINDSENVLTASNEEMQICDNQLGTGDKVNNENGSGQILIKTCPEVCKSCIGEKESCELMQKLNYCNENICVILIRGKEVPRSILEASKGSAETDRRVSKRSKKTKNGSSISLKVSASTTLYQLKMMIWESFGVIRENQILQKGDKTIEIDDEYTTLADVNIFAGDQIIVRDSEIHENRDIADELYDEKMDVQHTEEGFRGTLLTANVSSQVV 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0264 1081 MobiDBLite consensus disorder prediction 1 25 - -
Lal17g0264 1081 ProSiteProfiles DUSP domain profile. 747 867 IPR006615 GO:0004843
Lal17g0264 1081 ProSiteProfiles Ubiquitin domain profile. 972 1038 IPR000626 GO:0005515
Lal17g0264 1081 SUPERFAMILY DUSP-like 530 603 IPR035927 -
Lal17g0264 1081 CDD Ubl_USP48 975 1072 IPR044743 GO:0004197|GO:0004843|GO:0016579
Lal17g0264 1081 ProSiteProfiles DUSP domain profile. 511 603 IPR006615 GO:0004843
Lal17g0264 1081 SUPERFAMILY Ubiquitin-like 974 1040 IPR029071 -
Lal17g0264 1081 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Lal17g0264 1081 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 447 IPR028889 -
Lal17g0264 1081 Gene3D Cysteine proteinases 94 447 - -
Lal17g0264 1081 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 2 1051 - -
Lal17g0264 1081 Gene3D - 743 862 IPR035927 -
Lal17g0264 1081 Pfam Ubiquitin carboxyl-terminal hydrolase 108 444 IPR001394 GO:0004843|GO:0016579
Lal17g0264 1081 SUPERFAMILY DUSP-like 639 705 IPR035927 -
Lal17g0264 1081 SUPERFAMILY Cysteine proteinases 105 444 IPR038765 -
Lal17g0264 1081 ProSiteProfiles DUSP domain profile. 618 726 IPR006615 GO:0004843
Lal17g0264 1081 SMART dusp 529 605 IPR006615 GO:0004843
Lal17g0264 1081 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 1051 - -
Lal17g0264 1081 Gene3D - 970 1041 - -
Lal17g0264 1081 CDD Peptidase_C19L 108 444 IPR033841 GO:0004843
Lal17g0264 1081 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0264 Lal-Chr17 1644379 1652679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0264 105 382 Miscellaneous Gene Families AT2G24640 29.097 3.23e-25 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0264 - - gmx:100815770 1797.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0264 17 1644379 1652679 Lal17g0264 17 1644379 1652679 ECH
Lal8g1539 8 19710851 19722162 Lal17g0264 17 1644379 1652679 PCT
Lal17g0264 17 1644379 1652679 Lal8g1539 8 19710851 19722162 PCT