Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1430 ATGAGTGTGACACCCAAAATTGCTCCTTCAATGCTTTCCTCTGATTTCGCCAATTTGGCTTCTGAGGCTCATCGTATGCTCACTTTTGGTGCTGATTGGCTCCACATGGATATAATGGCTGTCATATCAGCTGAAAAAGAGTGTCAATCTTGTGTCATCTTCAATAATAATAAGAGAATCAATCAACAACAAGTTGCCGATGTAGGTTTTGCTAGGTATTCATTCCTTATCAGTGCTGCAGTTAACTCTGAACCTCACCCACACACACACAAATATCATATTCATAGTGCGAGTGCACGATGCTTCCACCCAGTGAGGCCTGAGAATGTAGATGTATGCAGCCTTAGCCTCACAAGCGAAGACGCTTTTTTCCAGGATTTGAAACTTGGGAAGGAGAATTATTTCATCAACTTGGTTGCTATGGATGTTCTTGAATGTGTTCCCTTTTCTCCCCCGATCTTGTGCAGGCACTTTGTCCCTAATTTAACTCTTGGTGCTCCAATCATTGAAAGTTTGAGAAAGCACACAAAGGCATATCTTGACTGTCACCTGATGGTTACAAATCCTCTTGATTATGTTGAACCTTTGGGAAAAGCTGGTGCTTCTGGTTTTACCTTCCATATTGAGACATCGAAAGATAACTGGGAAGAACTTATCCAAAGAATTAAGGCGCAGGGCATGAGGCCTGGTGTAGCATTAAAGCCTGGGACACCCGTTGGAGAGGTTTATTCCCTGGTTGAAGCTGAAAATCCGGTAGAAATGGTTCTTGTAATGACTGTAGAACCTGGATTTGGTGGACAAAAGTTTATGCCAGAGATGATGGATAAGGTACGGACTCTAAGGAAGAAGTATCCATCACTTGACATAGAGGTTGATGGTGGTTTAGGGCCATCGACCATAGACGCGGCCGCATCGGCAGGAGCAAATTGTATTGTTGCAGGGAGTTCAGTGTTTGGAGCCCCTGAGCCAGCTCAAGTAATATCCTTACTGAGGAATTCTGTTGAGAAATCCCAGCAAACACATTGA 1026 0.4357 MSVTPKIAPSMLSSDFANLASEAHRMLTFGADWLHMDIMAVISAEKECQSCVIFNNNKRINQQQVADVGFARYSFLISAAVNSEPHPHTHKYHIHSASARCFHPVRPENVDVCSLSLTSEDAFFQDLKLGKENYFINLVAMDVLECVPFSPPILCRHFVPNLTLGAPIIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHIETSKDNWEELIQRIKAQGMRPGVALKPGTPVGEVYSLVEAENPVEMVLVMTVEPGFGGQKFMPEMMDKVRTLRKKYPSLDIEVDGGLGPSTIDAAASAGANCIVAGSSVFGAPEPAQVISLLRNSVEKSQQTH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1430 341 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 1 340 IPR000056 GO:0005975|GO:0016857
Lal8g1430 341 SUPERFAMILY Ribulose-phoshate binding barrel 157 335 IPR011060 -
Lal8g1430 341 SUPERFAMILY Ribulose-phoshate binding barrel 5 41 IPR011060 -
Lal8g1430 341 Pfam Ribulose-phosphate 3 epimerase family 156 318 IPR000056 GO:0005975|GO:0016857
Lal8g1430 341 Pfam Ribulose-phosphate 3 epimerase family 6 39 IPR000056 GO:0005975|GO:0016857
Lal8g1430 341 Gene3D Aldolase class I 1 341 IPR013785 -
Lal8g1430 341 CDD RPE 6 331 IPR000056 GO:0005975|GO:0016857
Lal8g1430 341 PANTHER RIBULOSE-PHOSPHATE 3-EPIMERASE 1 340 - -
Lal8g1430 341 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 255 277 IPR000056 GO:0005975|GO:0016857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1430 Lal-Chr8 18440077 18445611 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1430 K01783 - gmx:100500085 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1430 8 18440077 18445611 Lal8g1430 8 18440077 18445611 ECH
Lal8g1430 8 18440077 18445611 Lal25g1183 25 15353830 15358039 LSH