Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g1183 ATGGGAGTGACACCCAAAATTGCTCCTTCAATGCTTTCCTCTGACTTCTCCAATTTGGCTTCTGAGGCTCATCGCATGATCAATTATGGCGCCGATTGGCTCCACATGGATATCATGCTTTTGACAATTGAGATTAACAGTGGTTACTGGCTGAGAGGGGGAATTGAAAAAATAACAATTTTCTGTATTGCCATGATTTTTGGTGCATTTGAGTCCTTAGCTGTTAACCCTTGCAGGGCATATCTTGACTGTCACCTGATGGTTACTAATCCTCTCGATTATGTCGAACCTTTGGGAAAAGCGGGTGCTTCCGGTTTTACCTTCCATATTGAGACATCTAAAGATAACTGGAAAGAACTTATCCAAAGAATTAGTATGCATGGCATGAGGCCTGGTGTAGCATTAAAGCCTGTGACACCCATTGAAGAGGTTTATGCCTTGGTTGAGGCTGAAAATCCTGTGGAAATGGTTCTGGTAATGACTGTAGAACCTGGATTTGGTGGACAAAAGTTTATGCCAGAGATGATGGATAAGGTACGGATTCTGAGGAAGAAGTATCCATCGCTTGATATCGAGGTTGATGGTGGTTTAGGGCCTTCAACCATAAACACGGCCGCATCGGCAGGTGCAAATTGTATTGTTGCAGGAAGTTCAGTGTTTGGAGCCCCTGAGCCAGCTCAAGTAATATCCTTACTCAGGAATTCTGTTGAGAAAGCCCAGCAAACACATTGA 732 0.4372 MGVTPKIAPSMLSSDFSNLASEAHRMINYGADWLHMDIMLLTIEINSGYWLRGGIEKITIFCIAMIFGAFESLAVNPCRAYLDCHLMVTNPLDYVEPLGKAGASGFTFHIETSKDNWKELIQRISMHGMRPGVALKPVTPIEEVYALVEAENPVEMVLVMTVEPGFGGQKFMPEMMDKVRILRKKYPSLDIEVDGGLGPSTINTAASAGANCIVAGSSVFGAPEPAQVISLLRNSVEKAQQTH 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g1183 243 CDD RPE 6 233 IPR000056 GO:0005975|GO:0016857
Lal25g1183 243 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 157 179 IPR000056 GO:0005975|GO:0016857
Lal25g1183 243 Pfam Ribulose-phosphate 3 epimerase family 76 220 IPR000056 GO:0005975|GO:0016857
Lal25g1183 243 Pfam Ribulose-phosphate 3 epimerase family 6 39 IPR000056 GO:0005975|GO:0016857
Lal25g1183 243 SUPERFAMILY Ribulose-phoshate binding barrel 5 238 IPR011060 -
Lal25g1183 243 Gene3D Aldolase class I 1 243 IPR013785 -
Lal25g1183 243 PANTHER RIBULOSE-PHOSPHATE 3-EPIMERASE 1 242 - -
Lal25g1183 243 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 1 242 IPR000056 GO:0005975|GO:0016857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g1183 Lal-Chr25 15353830 15358039 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g1183 K01783 - gmx:100500085 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g1183 25 15353830 15358039 Lal25g1183 25 15353830 15358039 ECH
Lal8g1430 8 18440077 18445611 Lal25g1183 25 15353830 15358039 LSH