Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1096 ATGTTAAGGGTTGCAGGTAAGAGGCTTTCTTCTCTCTCCTCCTCTTCATGGAGAACTAACCACGCCGCCACCGCGTTTCTCTCTCGCAACCCCGTCGCACTACCCGAGGAACGGAACTCCGACCCGATTTTGATCCGACCCGAATTCCTTCTTCCTTTCAGAGGTTTTGCTGCTGAATCGCTGATCCACACAAAAGAAAACAACATTATTCCTGAAATTCCACCAACTATTGCAGCTGTTAAAAACCCTTCTTCTAAGATTATATACGATGAACACAACCATGAACGGTTCGCTCCAGGTGACCCTAGCAAGAGGGCATTTGCCTACTTTGTCCTAACAGGTGGTAGATTTGTTTATGCCTCTCTGGTCCGTCTCCTTGTCCTCAAGTTTGTGCTCAGCATGTCTGCCAGTAAGGATGTTCTTGCTCTGGCTTCACTTGAAGTTGATCTATCCAGCATTGAGCCAGGCTCTACCGTGACTGTTAAGTGGCGTGGAAAGCCAGTGTTCATCAGGCGCAGAACAGATGACGATATTAAGCTGGCAAACAGTGTTGATGTTGGATCTCTTCGAGATCCCCAGCAGGATTCAGAGAGAGTCAAGGACCCAGAATGGCTCATTGTTGTTGGGGTTTGCACACATTTGGGTTGCATTCCCTTGCCAAATGCTGGTGACTTTGGCGGGTGGTTTTGCCCATGCCATGGTTCACATTATGATGTCTCTGGAAGAATTAGGAAGGGACCAGCACCATACAATCTAGAGGTACCAACTTATGCCTTCTTAGATGAAAATAAGTTGCTGATTGGTTGA 807 0.4734 MLRVAGKRLSSLSSSSWRTNHAATAFLSRNPVALPEERNSDPILIRPEFLLPFRGFAAESLIHTKENNIIPEIPPTIAAVKNPSSKIIYDEHNHERFAPGDPSKRAFAYFVLTGGRFVYASLVRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTDDDIKLANSVDVGSLRDPQQDSERVKDPEWLIVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDVSGRIRKGPAPYNLEVPTYAFLDENKLLIG 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1096 268 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 198 266 IPR017941 GO:0051537
Lal8g1096 268 Pfam Rieske [2Fe-2S] domain 151 254 IPR017941 GO:0051537
Lal8g1096 268 CDD Rieske_cytochrome_bc1 145 268 - -
Lal8g1096 268 SUPERFAMILY ISP domain 130 266 IPR036922 GO:0051537
Lal8g1096 268 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 1 268 - -
Lal8g1096 268 SUPERFAMILY ISP transmembrane anchor 85 141 - -
Lal8g1096 268 Gene3D - 137 268 IPR036922 GO:0051537
Lal8g1096 268 Pfam Ubiquinol cytochrome reductase transmembrane region 93 139 IPR004192 GO:0008121
Lal8g1096 268 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 1 268 IPR014349 GO:0051537
Lal8g1096 268 TIGRFAM Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 118 268 IPR006317 GO:0008121
Lal8g1096 268 PRINTS Rieske 2Fe-2S subunit signature 206 217 IPR005805 GO:0016020|GO:0051537
Lal8g1096 268 PRINTS Rieske 2Fe-2S subunit signature 228 240 IPR005805 GO:0016020|GO:0051537
Lal8g1096 268 PRINTS Rieske 2Fe-2S subunit signature 240 252 IPR005805 GO:0016020|GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1096 Lal-Chr8 9129981 9136212 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1096 K00411 - gmx:100806917 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1096 8 9129981 9136212 Lal8g1096 8 9129981 9136212 ECH
Lal8g1096 8 9129981 9136212 Lal12g1302 12 15973116 15977045 PCT
Lal12g1302 12 15973116 15977045 Lal8g1096 8 9129981 9136212 PCT