Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1302 ATGTTGAGGGTTACAGCTAGAAAACTTTCTTCTTCTTCTTGTTCTCAATGGAGGGCCCACCAATCTTCTCTATACGCTTTCCTTCCTCAAAACCCTATCGATCATAACAGATCCGTTTCTTCTTCTTCTTCTTCTTCTTCTTCAATTCAACACTCTTTTTCATTTTCACACTTTCGAGGTCTTGCTACTGAATCACTGATCCACACCAACGAAAACAGCATCATTCCTGACATTCCAGCCACTATTGCTGCTATTAAAAACCCATCTTCGAAGATTGTTTATGATGAGCACAACCATGAGCGATTTCCTCCAGGTGACCCAAGCAAGAGGGCATTTGCCTACTTTGTCCTAACAGGTGGTAGGTTTGTTTATGCCTCTCTGGTCCGTCTTCTTGTACTCAAGTTTGTACTCAGCATGTCTGCCAGTAAGGATGTTCTTGCTCTGGCCTCACTTGAGGTTGATCTCTCCAGTATTGAGCTAGGCTCTACCGTGACTGTTAAGTGGCGTGGAAAGCCGGTATTCATCAGGCGCCGAACAGAGGATGATATTAACCTGGCAAACAGCGTCGATGTCGGAACTCTCCGTGATCCTCAACCTGATTCAGTTAGAGTCAAGAACCCAGAATGGCTCATAGTGGTTGGGGTTTGCACACATTTGGGTTGCATTCCATTGCCAAATGCTGGTGACTTTGGTGGGTGGTTTTGCCCATGCCATGGTTCACATTATGATGTTTCTGGAAGAATTAGGAAGGGACCAGCACCATACAACTTGGAGGTACCCACTTATTCCTTCTTGGAAGAAAACAAGTTGTTGATTGGTTGA 822 0.4477 MLRVTARKLSSSSCSQWRAHQSSLYAFLPQNPIDHNRSVSSSSSSSSSIQHSFSFSHFRGLATESLIHTNENSIIPDIPATIAAIKNPSSKIVYDEHNHERFPPGDPSKRAFAYFVLTGGRFVYASLVRLLVLKFVLSMSASKDVLALASLEVDLSSIELGSTVTVKWRGKPVFIRRRTEDDINLANSVDVGTLRDPQPDSVRVKNPEWLIVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDVSGRIRKGPAPYNLEVPTYSFLEENKLLIG 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1302 273 Pfam Rieske [2Fe-2S] domain 162 259 IPR017941 GO:0051537
Lal12g1302 273 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 1 273 IPR014349 GO:0051537
Lal12g1302 273 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 1 273 - -
Lal12g1302 273 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 183 271 IPR017941 GO:0051537
Lal12g1302 273 Gene3D - 142 273 IPR036922 GO:0051537
Lal12g1302 273 Pfam Ubiquinol cytochrome reductase transmembrane region 103 144 IPR004192 GO:0008121
Lal12g1302 273 PRINTS Rieske 2Fe-2S subunit signature 211 222 IPR005805 GO:0016020|GO:0051537
Lal12g1302 273 PRINTS Rieske 2Fe-2S subunit signature 233 245 IPR005805 GO:0016020|GO:0051537
Lal12g1302 273 PRINTS Rieske 2Fe-2S subunit signature 245 257 IPR005805 GO:0016020|GO:0051537
Lal12g1302 273 CDD Rieske_cytochrome_bc1 150 273 - -
Lal12g1302 273 SUPERFAMILY ISP domain 135 272 IPR036922 GO:0051537
Lal12g1302 273 TIGRFAM Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 123 273 IPR006317 GO:0008121
Lal12g1302 273 SUPERFAMILY ISP transmembrane anchor 90 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1302 Lal-Chr12 15973116 15977045 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1302 K00411 - tcc:18601136 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1302 12 15973116 15977045 Lal12g1302 12 15973116 15977045 ECH
Lal8g1096 8 9129981 9136212 Lal12g1302 12 15973116 15977045 PCT
Lal12g1302 12 15973116 15977045 Lal8g1096 8 9129981 9136212 PCT