Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1039 ATGGAAAAGATGTGGTTTTTAAGATGGGTTATGGTGTTCATTGGATTTGTCTCAGTTACAGGGTTAGGTGTGAATTGGGGAACACAATCAACACATAATTTACCACCTGAAAAAGTAGTTCAGATGTTGAAGGATAATGGGATTCAAAAAGTGAAGCTTTTTGATGCAGATGAAACTACAATGAGTGCTCTTGCTGGGTCTGGGATTGAAGTTATGGTTGCTATCCCTAATAATGGACTTGCTGATATGAATAGCTATGATCGTGCTCAAGAATGGGTTAAGAAGAACATCACTCGTTACCATTTCAATGGAGGAGTTAACATCAAATATGTAGCGGTTGGAAACGAGCCATTTTTGAAATCCTACAATAATTCATTCTTGAATATTACCCTTCCTGCACTACAGAACATCCAAAATGCCCTAAATGAAGCTGGTGTCGGAGATTCTATAAAGGCTACAGTACCCTTAAATGCTGATGTATATCAGTCTCCAGATGAAAAACCTTTCCCATCTGCAGGAATATTTAGGCCTGATATCAGTGCTCTCATGACCCAGATGGTGCAATTTTTGAGCAAGAATGGTGCACCTTTCACTGTAAACATTTACCCCTTCTTAAGTCTTTATGGGAATGATAATTTTCCATTTAACTATGCCTTCTTTGATGGGGTCGACACTCCCATAAATGATAACGGGATTTCGTACACCAATGTCTTTGATGCAAACTTCGATACCTTGGTTTCTGCTCTCAAAGCAGTGGGATATGGTGACTTGCCCGTTTTGGTAGGAGAAGTAGGATGGCCAACGGACGGAGACAAGAATGCCAATGCTGGCAATGCTTTACGTTTTTATAACGGCCTTCTCCCAAGGCTTGCAGCAAATAAAGGAACGCCACGCCGACCTGGATTCATCGAAGTTTATCTGTTTGCACTTATTGACGAGGATGCTAAGAGCATCGCTCCCGGGAGCTTTGAGCGTCACTGGGGAATATTTACATTTGATGGGCAGCCTAAGTTTCCAATGGATCTTTCTGGTAAGGGTCAGGGCAAACTTCTTATCGGCGCACAAAATGTGAAATATCTTGCTCCGAAATGGTGCGTGTTTAATCCCGATGCCAAAGATCTCTCCAAACTCGCAGATAATATTAACTACGCGTGCACCTTCGGAGATTGCACTACACTTGGGTATGGATCTTCTTGCAATAAACTTGATGCTAATGGAAATGCTTCATATGCATTTAACATGTATTTCCAGGTGCAAAATCAGAATCCTTCTGCATGCAATTTTCAAGGTTTAGCCAAGATTAGTGAGCAGAATATTTCAACACCCACTTGCAATTTTCCTATTCAGATGGTTGTTGCTTCTTTATCCTCTTCTTTGATGCCCTCATTTGTAGTATTTTTCTTACTTATTACTCTATCCATGATTATGCTAACCAGTCGCGAGAAAGCCAAGAACGAACCTCATAGACAACCTTCCCGATTTGCTGAATACGAATGTGAATATCTTCTGAAATAA 1515 0.4073 MEKMWFLRWVMVFIGFVSVTGLGVNWGTQSTHNLPPEKVVQMLKDNGIQKVKLFDADETTMSALAGSGIEVMVAIPNNGLADMNSYDRAQEWVKKNITRYHFNGGVNIKYVAVGNEPFLKSYNNSFLNITLPALQNIQNALNEAGVGDSIKATVPLNADVYQSPDEKPFPSAGIFRPDISALMTQMVQFLSKNGAPFTVNIYPFLSLYGNDNFPFNYAFFDGVDTPINDNGISYTNVFDANFDTLVSALKAVGYGDLPVLVGEVGWPTDGDKNANAGNALRFYNGLLPRLAANKGTPRRPGFIEVYLFALIDEDAKSIAPGSFERHWGIFTFDGQPKFPMDLSGKGQGKLLIGAQNVKYLAPKWCVFNPDAKDLSKLADNINYACTFGDCTTLGYGSSCNKLDANGNASYAFNMYFQVQNQNPSACNFQGLAKISEQNISTPTCNFPIQMVVASLSSSLMPSFVVFFLLITLSMIMLTSREKAKNEPHRQPSRFAEYECEYLLK 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1039 504 ProSitePatterns Glycosyl hydrolases family 17 signature. 257 270 IPR000490 GO:0004553|GO:0005975
Lal8g1039 504 Pfam Glycosyl hydrolases family 17 22 341 IPR000490 GO:0004553|GO:0005975
Lal8g1039 504 Pfam X8 domain 363 432 IPR012946 -
Lal8g1039 504 Gene3D Glycosidases 21 348 - -
Lal8g1039 504 Gene3D - 361 457 - -
Lal8g1039 504 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 2 465 IPR044965 GO:0004553|GO:0005975
Lal8g1039 504 SUPERFAMILY (Trans)glycosidases 22 341 IPR017853 -
Lal8g1039 504 SMART X8_cls 363 446 IPR012946 -
Lal8g1039 504 PANTHER GLYCOSIDE HYDROLASE, FAMILY 17, X8 2 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1039 Lal-Chr8 8286787 8291143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1039 17 451 Miscellaneous Gene Families AT1G64760 77.241 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1039 - - gmx:100815300 824.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1039 8 8286787 8291143 Lal12g1309 12 16055071 16073919 PCT
Lal12g1309 12 16055071 16073919 Lal8g1039 8 8286787 8291143 PCT