Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0891 ATGGATCAAGGAGAACTTGGACGTGTTTTTCAAATGTTTGATAGAAATGGTGATGGTCAAATTACAAAAAAAGAGCTTAGTGAGTCTCTAAAAAACCTTGGAATATGCATCTCAGAAGAAGATTTGATCCAAATGATTGAAAAAATTGATGCAAATGGAGATGGGTATGTTGATATTGAAGAATTTGGTGAGTTATATCAAACAATAATGGATGAGAAAGATGAGGATGAGGATGAGGATATGAAAGAAGCATTCAATGTTTTTGATCAAAATGGAGATGGGTTTATCACAGGAGAAGAATTGAGTGCAGTTTTATCTTCTTTGGGGTTAAAATATGGTAAGACATTAGAAGATTGCAAAAATATGATTAAGAAAGTTGATGTGGATGGTGATGGGATGGTTAGCTTCAAAGAATTTAAGAAAATGATGAAGGCTGGTGGCTTTGCTGCTTCATTAAGCTGA 462 0.3398 MDQGELGRVFQMFDRNGDGQITKKELSESLKNLGICISEEDLIQMIEKIDANGDGYVDIEEFGELYQTIMDEKDEDEDEDMKEAFNVFDQNGDGFITGEELSAVLSSLGLKYGKTLEDCKNMIKKVDVDGDGMVSFKEFKKMMKAGGFAASLS 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0891 153 Pfam EF-hand domain pair 6 67 IPR002048 GO:0005509
Lal8g0891 153 Pfam EF-hand domain pair 79 144 IPR002048 GO:0005509
Lal8g0891 153 Gene3D - 79 145 - -
Lal8g0891 153 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Lal8g0891 153 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 151 - -
Lal8g0891 153 ProSiteProfiles EF-hand calcium-binding domain profile. 76 111 IPR002048 GO:0005509
Lal8g0891 153 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Lal8g0891 153 CDD EFh 84 144 IPR002048 GO:0005509
Lal8g0891 153 Gene3D - 2 78 - -
Lal8g0891 153 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 151 - -
Lal8g0891 153 SMART efh_1 118 146 IPR002048 GO:0005509
Lal8g0891 153 SMART efh_1 5 33 IPR002048 GO:0005509
Lal8g0891 153 SMART efh_1 41 69 IPR002048 GO:0005509
Lal8g0891 153 SMART efh_1 80 108 IPR002048 GO:0005509
Lal8g0891 153 ProSitePatterns EF-hand calcium-binding domain. 89 101 IPR018247 -
Lal8g0891 153 ProSiteProfiles EF-hand calcium-binding domain profile. 114 149 IPR002048 GO:0005509
Lal8g0891 153 ProSitePatterns EF-hand calcium-binding domain. 127 139 IPR018247 -
Lal8g0891 153 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Lal8g0891 153 CDD EFh 5 62 IPR002048 GO:0005509
Lal8g0891 153 SUPERFAMILY EF-hand 5 143 IPR011992 -
Lal8g0891 153 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0891 Lal-Chr8 6534003 6534464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0891 1 150 EF-hand Containing Proteins AT3G07490 76.667 6.26e-72 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0891 K13448 - gmx:100806637 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0891 8 6534003 6534464 Lal10g0613 10 13903127 13903585 LSH