Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0613 ATGGATCAAGGAGAACTTAACCGAATTTTTCAAATGTTTGATCGAAATGGTGATGGTAGGATTACAAAAAAAGAGCTTAATGATTCTCTAAAAAACCTTGGCATATGCATCTCAGAACAAGATTTGATACAAATGATTGAAAAAATTGATGTAAATGGAGATGGGTATGTTGATATTGATGAATTTGGTGAGTTATATCAAACAATAATGGATGAGAAAGATGAAGATGAAGATATGAAAGAAGCATTCAATGTATTTGATCAAAATGGTGATGGGTTCATTACAGGAGAAGAATTAAGTGAAGTTTTATCATCTTTGGGATTAAAATATGGTAAGACAATAGAAGATTGTAAAAAGATGATTAAGAAAGTGGATGTGGATGGTGATGGAATGGTTAGTTTCAAAGAATTTAAGCAAATGATGAAAGCTGGTGGATTTGCTGCAGCTTCATTAAGTTGA 459 0.3159 MDQGELNRIFQMFDRNGDGRITKKELNDSLKNLGICISEQDLIQMIEKIDVNGDGYVDIDEFGELYQTIMDEKDEDEDMKEAFNVFDQNGDGFITGEELSEVLSSLGLKYGKTIEDCKKMIKKVDVDGDGMVSFKEFKQMMKAGGFAAASLS 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0613 152 Gene3D - 1 77 - -
Lal10g0613 152 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Lal10g0613 152 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Lal10g0613 152 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 151 - -
Lal10g0613 152 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 151 - -
Lal10g0613 152 SMART efh_1 116 144 IPR002048 GO:0005509
Lal10g0613 152 SMART efh_1 78 106 IPR002048 GO:0005509
Lal10g0613 152 SMART efh_1 41 69 IPR002048 GO:0005509
Lal10g0613 152 SMART efh_1 5 33 IPR002048 GO:0005509
Lal10g0613 152 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Lal10g0613 152 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Lal10g0613 152 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Lal10g0613 152 Gene3D - 78 143 - -
Lal10g0613 152 Pfam EF-hand domain pair 77 142 IPR002048 GO:0005509
Lal10g0613 152 Pfam EF-hand domain pair 6 67 IPR002048 GO:0005509
Lal10g0613 152 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Lal10g0613 152 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Lal10g0613 152 SUPERFAMILY EF-hand 5 141 IPR011992 -
Lal10g0613 152 PRINTS Parvalbumin signature 65 83 - -
Lal10g0613 152 PRINTS Parvalbumin signature 87 103 - -
Lal10g0613 152 PRINTS Parvalbumin signature 124 137 - -
Lal10g0613 152 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0613 Lal-Chr10 13903127 13903585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0613 1 148 EF-hand Containing Proteins AT3G07490 80.405 2.49e-75 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0613 K13448 - gmx:100806637 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0891 8 6534003 6534464 Lal10g0613 10 13903127 13903585 LSH