Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0879 ATGGTACATATGGATACTTTGGTCAAAACACCTAACAAGCTTGAATTTTTACACCCACTTCATGGTTATTCAGAAAAGTTGAGTAATTTAAGTTACTGTGCTAAGTTGCAAAACCAGGAGGTTAGATTTGGTTCCAAGAAATCACTATTGAAATGGGGTAGATGTGGTGTTTTGAGGGCTAGTAGTAGTAATGCGCTTCTAGAGCTTGTTCCGGAAATTAAGAAGGAGAATCTTGATTTTGAACTTCCTCTGTATGATTCATCAAAAGGAGCTTTGGTGGACCTTGCTGTTGTGGGTGGAGGCCCTTCGGGGCTTGCGGTTGCGCAGCAGGTTTCTGATGCAGGGCTTTCGGTCTGTGCCATTGATCCAAACCCGAGATTGATTTGGCCGAATAATTATGGTGTTTGGGTTGATGAGTTTGAAGCAATGGATTTACTTGATTGCCTCGACACCACTTGGTCTGGCGCCGTTGTCTACATCGATGAAAAAACAAAAAAGAATCTAGATAGACCTTATGGTAGGGTCAATAGGAAGCAATTGAAATCTAAGATGCTTCAGAAATGCATATCAAATGGTGTCAAGTTTCATCAAGCTAAAGTTATCAAGGTTATTCATGAGGATTCCAAATCTATGCTGATTTGTAATGATGGTGTAACTGTTCAGGCTACCTTGGTTCTCGATGCAACTGGCTTTTCAAGAAGCCTTGTTCAGTATGATAAACCATATAATCCAGGTTACCAAGTTGCCTATGGGATTTTGGCCGAGGTTGAAGAACACCCTTTTGACTTAGATAAAATGCTTTTTATGGACTGGAGAGATTCACATCTGGATAGTGACATGGAACTGAAGGAGAGAAATAAAAGAATACCCACTTTTCTATATGCAATGCCCTTTTCATCGACCAAGATATTTTTGGAAGAAACTTCCCTTGTTGCACGGCCGGGGTTAAGTATGGGTGATATACAGGAAAGAATGGTTGCTAGGTTGAAACACTTGGGCATCAAAGTGAAAAGCATCGAAGAAGACGAGCATTGTGTCATCCCAATGGGTGGCCCCCTACCGGTTCTTCCCCAAAGAGTTATCGGAATTGGTGGTACCGCTGGGATGGTGCATCCGTCAACCGGGTATATGGTTGCAAGGACACTAGCTGCAGCTCCTATTGTTGCAAATGCTATTGTGCAATGCCTTGGTTCTGATAAGGCTCTTTCAGGAGATGAATTATCTGCACAAGTGTGGAAAGATTTATGGCCCATCCAAAGGCGGCGTCAAAGAGAATTCTTCTGTTTCGGTATGGACATCTTACTGAAGCTTGATTTACCGGGCACAAAAAGGTTTTTTGATGCATTTTTCGATCTGAAACCTCATTATTGGCATGGATTCTTATCATCAAGACTGTTTCTTCCTGAACTATTATTTTTTGGACTTTCTCTGTTTTCTTATGCTTCTAATAGATCTAGGTTAGAGATTATGGCAAAGGGGACTGTTCCTTTGGTAGGAATGGTAAAAAACTTGATACAAGATACTGAGTAA 1530 0.4124 MVHMDTLVKTPNKLEFLHPLHGYSEKLSNLSYCAKLQNQEVRFGSKKSLLKWGRCGVLRASSSNALLELVPEIKKENLDFELPLYDSSKGALVDLAVVGGGPSGLAVAQQVSDAGLSVCAIDPNPRLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVYIDEKTKKNLDRPYGRVNRKQLKSKMLQKCISNGVKFHQAKVIKVIHEDSKSMLICNDGVTVQATLVLDATGFSRSLVQYDKPYNPGYQVAYGILAEVEEHPFDLDKMLFMDWRDSHLDSDMELKERNKRIPTFLYAMPFSSTKIFLEETSLVARPGLSMGDIQERMVARLKHLGIKVKSIEEDEHCVIPMGGPLPVLPQRVIGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVQCLGSDKALSGDELSAQVWKDLWPIQRRRQREFFCFGMDILLKLDLPGTKRFFDAFFDLKPHYWHGFLSSRLFLPELLFFGLSLFSYASNRSRLEIMAKGTVPLVGMVKNLIQDTE 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0879 509 PANTHER LYCOPENE BETA CYCLASE, CHLOROPLASTIC 9 509 - -
Lal8g0879 509 Pfam Lycopene cyclase protein 94 486 - -
Lal8g0879 509 Gene3D - 91 437 IPR036188 -
Lal8g0879 509 SUPERFAMILY FAD/NAD(P)-binding domain 93 476 IPR036188 -
Lal8g0879 509 PANTHER UBIQUINONE BIOSYNTHESIS MONOOXYGENASE COQ6, MITOCHONDRIAL 9 509 - -
Lal8g0879 509 TIGRFAM carotene-cycl: lycopene cyclase family protein 94 489 IPR010108 GO:0016117|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0879 Lal-Chr8 6436036 6437565 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0879 K06443 - gmx:100783830 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1400 11 17440966 17444490 Lal8g0879 8 6436036 6437565 LSH