Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0466 ATGTCATCAGCTTCAAAACTCACACTATTCGGACTACGAACTGCGCTATTCCGCACTCTTCCACCTCCAACTACTTTTTCTCCCTTCTTTCTCCGCTTCCACCACCGCCGCCGCCACTCTTTCTCTTCCGCCACCGCTGCAACTGAAACTCTGTCCTCTGTTTCCCAACAACACCATCATCCTTGGCCCGAATGGATTTCTTTCGTGGACACTTTGAACACCAAAGGCTACATTACCAAATCATCTTCTTCTCCTGATGAAGATGAAACTGTTTATGTCAATATCAATCTCTTGAAGGACCCTTGTCTCAGTTTTGCTCGTGACCGCTACGATATTTTCAAATCGTTGTCCTTGAAGGATATTCAAGGGGTTGTCGAGGGAGGATGTCCTAATCTTCTCCGAAAAGCTGTTAATTCAGCTAAAAGGTTGAGAGTCCATGTGCGATTAGATGAAGGAGATGTTTGTAGTGCTTGCAATCTACGTGACTCCTGTGATAGAGCTTATGTGATTCTAAAGGAATTTGAAGCTGATGCTCGAACAGTGGATATAGTGCGAATACTTCTGTTTTACGCATTAGATCCACTTGTTCTTTCTGGAGGAGAGAAACCACCAGTCAGAGAAGCTATTGAATCATCTGCGAGGAAACTTCTATCTCAGCTAGTTAAGTTGAGTGAGTCGTCCCCTGCTCCAGCTCCCGCTTATACTTCTAATCCTTCTCGTCCAAAGCCTACCGCACATGATGCCAAGGCAAAAGACCAACCTCCAAGTTTTAGTTCTAAAAGGCTGTCTAAAGATGCTGAGATGAAGAAAGGTGATTGGACGTGTCCAAAATGCAATTTTATGAACTTCTCCAGAAATACGCAATGCCGAAATTGTAATGAACACAAGCCAGAGGATCTTAATGTGCCTACTGTTGAAATGAAGAAAGGGGATTGGATATGTCCTGAATGTAGTTTTATGAATTTTTCGAGAAACACACGATGTCTTAAATGCAAAACAGACGGCCCACCAAAGACGTCCAATACCGATGTTGTTGAAAGGAAAAAAGGAGATTGGACTTGCTCACAGTGCGGGTTCATGAACTATGCTAGCAATTCGAAGTGTTTGCGTTGTCCTGAGCTAAGGCCAAAGACACATCCGGGGGATTGGAATTGTCCCAAGTGTGATTTCATGAATTTTTCTGGGAAACTGAAATGTTTTCGTTGTCAAGAGCCAAACCCAAGTCCCAAGAAACATCCTGGGGATTGGAGTTGTCCCAAATGTGATTTCTACAATTATTCAAGAAACATGGCTTGTCTGAAGTGCAATACTGGATGCCCTAAAGACCAGCCAACTAGTGAGTATGAGGAGCATATGTGGAGAGGATCAAGTTGA 1374 0.4352 MSSASKLTLFGLRTALFRTLPPPTTFSPFFLRFHHRRRHSFSSATAATETLSSVSQQHHHPWPEWISFVDTLNTKGYITKSSSSPDEDETVYVNINLLKDPCLSFARDRYDIFKSLSLKDIQGVVEGGCPNLLRKAVNSAKRLRVHVRLDEGDVCSACNLRDSCDRAYVILKEFEADARTVDIVRILLFYALDPLVLSGGEKPPVREAIESSARKLLSQLVKLSESSPAPAPAYTSNPSRPKPTAHDAKAKDQPPSFSSKRLSKDAEMKKGDWTCPKCNFMNFSRNTQCRNCNEHKPEDLNVPTVEMKKGDWICPECSFMNFSRNTRCLKCKTDGPPKTSNTDVVERKKGDWTCSQCGFMNYASNSKCLRCPELRPKTHPGDWNCPKCDFMNFSGKLKCFRCQEPNPSPKKHPGDWSCPKCDFYNYSRNMACLKCNTGCPKDQPTSEYEEHMWRGSS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0466 457 MobiDBLite consensus disorder prediction 227 242 - -
Lal8g0466 457 ProSitePatterns Zinc finger RanBP2-type signature. 383 402 IPR001876 -
Lal8g0466 457 ProSiteProfiles Zinc finger RanBP2 type profile. 379 408 IPR001876 -
Lal8g0466 457 ProSiteProfiles Zinc finger RanBP2 type profile. 412 441 IPR001876 -
Lal8g0466 457 ProSitePatterns Zinc finger RanBP2-type signature. 312 331 IPR001876 -
Lal8g0466 457 PANTHER ASPARAGINE-RICH PROTEIN 332 378 - -
Lal8g0466 457 PANTHER ASPARAGINE-RICH PROTEIN 380 453 - -
Lal8g0466 457 PANTHER ASPARAGINE-RICH PROTEIN 32 298 - -
Lal8g0466 457 PANTHER ASPARAGINE-RICH PROTEIN 302 334 - -
Lal8g0466 457 SUPERFAMILY Ran binding protein zinc finger-like 346 378 IPR036443 -
Lal8g0466 457 Gene3D - 300 337 - -
Lal8g0466 457 Gene3D - 377 409 - -
Lal8g0466 457 Gene3D - 339 376 - -
Lal8g0466 457 Gene3D - 410 442 - -
Lal8g0466 457 Gene3D - 260 299 - -
Lal8g0466 457 Pfam Zn-finger in Ran binding protein and others 414 436 IPR001876 -
Lal8g0466 457 Pfam Zn-finger in Ran binding protein and others 269 297 IPR001876 -
Lal8g0466 457 Pfam Zn-finger in Ran binding protein and others 308 336 IPR001876 -
Lal8g0466 457 Pfam Zn-finger in Ran binding protein and others 348 371 IPR001876 -
Lal8g0466 457 Pfam Zn-finger in Ran binding protein and others 381 407 IPR001876 -
Lal8g0466 457 SUPERFAMILY Ran binding protein zinc finger-like 264 299 IPR036443 -
Lal8g0466 457 ProSiteProfiles Zinc finger RanBP2 type profile. 269 298 IPR001876 -
Lal8g0466 457 SUPERFAMILY Ran binding protein zinc finger-like 378 408 IPR036443 -
Lal8g0466 457 ProSitePatterns Zinc finger RanBP2-type signature. 416 435 IPR001876 -
Lal8g0466 457 MobiDBLite consensus disorder prediction 227 265 - -
Lal8g0466 457 ProSiteProfiles Zinc finger RanBP2 type profile. 308 337 IPR001876 -
Lal8g0466 457 ProSiteProfiles Zinc finger RanBP2 type profile. 348 377 IPR001876 -
Lal8g0466 457 ProSitePatterns Zinc finger RanBP2-type signature. 273 292 IPR001876 -
Lal8g0466 457 SMART zf_4 414 438 IPR001876 -
Lal8g0466 457 SMART zf_4 350 374 IPR001876 -
Lal8g0466 457 SMART zf_4 271 295 IPR001876 -
Lal8g0466 457 SMART zf_4 381 405 IPR001876 -
Lal8g0466 457 SMART zf_4 310 334 IPR001876 -
Lal8g0466 457 PANTHER ZINC FINGER PROTEIN 32 298 - -
Lal8g0466 457 PANTHER ZINC FINGER PROTEIN 332 378 - -
Lal8g0466 457 PANTHER ZINC FINGER PROTEIN 380 453 - -
Lal8g0466 457 PANTHER ZINC FINGER PROTEIN 302 334 - -
Lal8g0466 457 SUPERFAMILY Ran binding protein zinc finger-like 304 335 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0466 Lal-Chr8 3115561 3121383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0466 381 454 EF-hand Containing Proteins AT1G55040 44.595 2.39e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0466 - - gmx:100811037 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0466 8 3115561 3121383 Lal8g0466 8 3115561 3121383 ECH
Lal8g0466 8 3115561 3121383 Lal25g0477 25 3290075 3295287 LSH