Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal25g0477 ATGTCAACACCTTCAAAGCTCACACTATATTATACATTACGAACTGCACTTTCTCGCACCCTTTCACCCCCAACAACCTTTTCTCCCTTCTTTCTCCACCACCGCCGCCACCACCGCTCTTTCTCTTCCGCCACCGCCGCAACTCAAACCCTATCATCCGTGGATCAACACTGCCATCCATGGCCCGAATGGGTTTCCTTCGTTGACACTTTGAACACCAAAGGCTACATTACCAAACCTTCTTCTTCTCCTTCTCAAGATCAAACTGTTTATGCCAACATGAATCTATTGAAAGACCCTTGTCTCAGCTTCGCTCGCGATCGCTACGATATTTTCAAATCGCTGTCGTTGAAGGACATTCAAGGAGTTGTCGAGGGAGGATGTCCTAATCTTCTCCGGAAAGCTGTCAACTCAGCTAAACGATTGAGAGTTCATGTGCGACTAGATGAAGGAGATGTTTGTAGTGCTTGCAATCTGCGCGACTCTTGTGATAGAGCTTATGTTATTCTAAAGGAATTTGAAGCTGATGCTCGAACTGTGGATATAGTGCGAATGCTTATGCTCTACGCACTAGATCCACTTGTTCTTTCTGGAGAAGAGAAACCACCAGGCAGAGAAATTATTGAATCATCTGTAAGAAAACTTCTATCTCAGCTGATTGAGTTGACTGACTCATCCCCTGCTCCTGCTCCAGCTCCTGCTCCTACTCGTCCAAAGCCTACCACACAAGATGCCACTGCAAAAGGCCAACCTTCAACTTTTACGACTAATAAATTGTCTAAAGATGTGGAAATGAAGAAAGGTGACTGGATGTGCCCAAAATGCAATTTTATGAACTTCGCCAGAAATACACAATGCCTGAATTGTAATGAAGACAAGCCGGAGGCTCTTAATGTGCCTACTGTTGAAATGAAGAAAGGAGATTGGACCTGTCCTGAATGCAGTTTTATGAATTTTTCTAGAAACACACGCTGTCTTAAATGCAGAAAAGAGGGGCCACCAAAGATGTTCAATACAGATGAAGTTGAAAGGAAAAAAGGAGATTGGACTTGCTCGCAGTGTGGGTTCATGAATTTTGCAAGTAATTCGAAGTGTCTGCGTTGTCCTGAGCTAAGGCCGAAGACGCATCCTGGGGACTGGAATTGTCCGAAGTGCGATTTCATGAATTTTTCCGGTAAACTGAAATGTTTTCGATGTCAAGAGCCAAACCTAAGTCCGAAGAAACATCCTGGGGATTGGAGTTGTCCCAAATGCGATTTCTACAATTATTCAAGAAACATGGCTTGCTTGAAGTGCAATACTGGACGCCCAGAAGACCAACCAACTAGTGAGTACGAGGAACATATGTGGAGAAGATCAAGTTGA 1365 0.4418 MSTPSKLTLYYTLRTALSRTLSPPTTFSPFFLHHRRHHRSFSSATAATQTLSSVDQHCHPWPEWVSFVDTLNTKGYITKPSSSPSQDQTVYANMNLLKDPCLSFARDRYDIFKSLSLKDIQGVVEGGCPNLLRKAVNSAKRLRVHVRLDEGDVCSACNLRDSCDRAYVILKEFEADARTVDIVRMLMLYALDPLVLSGEEKPPGREIIESSVRKLLSQLIELTDSSPAPAPAPAPTRPKPTTQDATAKGQPSTFTTNKLSKDVEMKKGDWMCPKCNFMNFARNTQCLNCNEDKPEALNVPTVEMKKGDWTCPECSFMNFSRNTRCLKCRKEGPPKMFNTDEVERKKGDWTCSQCGFMNFASNSKCLRCPELRPKTHPGDWNCPKCDFMNFSGKLKCFRCQEPNLSPKKHPGDWSCPKCDFYNYSRNMACLKCNTGRPEDQPTSEYEEHMWRRSS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal25g0477 454 PANTHER ZINC FINGER PROTEIN 33 295 - -
Lal25g0477 454 PANTHER ZINC FINGER PROTEIN 333 375 - -
Lal25g0477 454 PANTHER ZINC FINGER PROTEIN 294 331 - -
Lal25g0477 454 PANTHER ZINC FINGER PROTEIN 377 450 - -
Lal25g0477 454 ProSiteProfiles Zinc finger RanBP2 type profile. 305 334 IPR001876 -
Lal25g0477 454 Gene3D - 257 296 - -
Lal25g0477 454 Gene3D - 336 374 - -
Lal25g0477 454 Gene3D - 298 334 - -
Lal25g0477 454 Gene3D - 406 439 - -
Lal25g0477 454 Gene3D - 375 405 - -
Lal25g0477 454 ProSiteProfiles Zinc finger RanBP2 type profile. 376 405 IPR001876 -
Lal25g0477 454 SMART zf_4 378 402 IPR001876 -
Lal25g0477 454 SMART zf_4 411 435 IPR001876 -
Lal25g0477 454 SMART zf_4 268 292 IPR001876 -
Lal25g0477 454 SMART zf_4 307 331 IPR001876 -
Lal25g0477 454 SMART zf_4 347 371 IPR001876 -
Lal25g0477 454 ProSitePatterns Zinc finger RanBP2-type signature. 380 399 IPR001876 -
Lal25g0477 454 ProSiteProfiles Zinc finger RanBP2 type profile. 266 295 IPR001876 -
Lal25g0477 454 SUPERFAMILY Ran binding protein zinc finger-like 302 332 IPR036443 -
Lal25g0477 454 ProSitePatterns Zinc finger RanBP2-type signature. 413 432 IPR001876 -
Lal25g0477 454 SUPERFAMILY Ran binding protein zinc finger-like 261 296 IPR036443 -
Lal25g0477 454 PANTHER ASPARAGINE-RICH PROTEIN 294 331 - -
Lal25g0477 454 PANTHER ASPARAGINE-RICH PROTEIN 33 295 - -
Lal25g0477 454 PANTHER ASPARAGINE-RICH PROTEIN 333 375 - -
Lal25g0477 454 PANTHER ASPARAGINE-RICH PROTEIN 377 450 - -
Lal25g0477 454 SUPERFAMILY Ran binding protein zinc finger-like 408 439 IPR036443 -
Lal25g0477 454 ProSitePatterns Zinc finger RanBP2-type signature. 270 289 IPR001876 -
Lal25g0477 454 SUPERFAMILY Ran binding protein zinc finger-like 376 404 IPR036443 -
Lal25g0477 454 Pfam Zn-finger in Ran binding protein and others 378 400 IPR001876 -
Lal25g0477 454 Pfam Zn-finger in Ran binding protein and others 345 368 IPR001876 -
Lal25g0477 454 Pfam Zn-finger in Ran binding protein and others 411 437 IPR001876 -
Lal25g0477 454 Pfam Zn-finger in Ran binding protein and others 266 290 IPR001876 -
Lal25g0477 454 Pfam Zn-finger in Ran binding protein and others 305 328 IPR001876 -
Lal25g0477 454 ProSitePatterns Zinc finger RanBP2-type signature. 309 328 IPR001876 -
Lal25g0477 454 MobiDBLite consensus disorder prediction 224 260 - -
Lal25g0477 454 SUPERFAMILY Ran binding protein zinc finger-like 338 375 IPR036443 -
Lal25g0477 454 ProSiteProfiles Zinc finger RanBP2 type profile. 409 438 IPR001876 -
Lal25g0477 454 MobiDBLite consensus disorder prediction 239 259 - -
Lal25g0477 454 ProSiteProfiles Zinc finger RanBP2 type profile. 345 374 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal25g0477 Lal-Chr25 3290075 3295287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal25g0477 411 440 EF-hand Containing Proteins AT1G55040 56.667 3.73e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal25g0477 - - gmx:100811037 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0477 25 3290075 3295287 Lal25g0477 25 3290075 3295287 ECH
Lal8g0466 8 3115561 3121383 Lal25g0477 25 3290075 3295287 LSH