Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0109 ATGGCGTCCCAAGCAAGCCTCCTCCTTCAAAAACAGCTCAAAGATCTTTGCAAACACCCTGTTGATGGTTTTTCTGCGGGTTTGGTAGACGAAACCAATATTTTCGAATGGAGTGTTACCATTATTGGACCCCCAGATACCCTTTACGAGGGGGGATTTTTCAATGCCATTATGAGTTTCCCGTCCAATTACCCAAATAGTCCACCAACAATCAAATTCACCTCAGAGCTATGGCATCCCAATGTGTATCCCGATGGGAGAGTTTGCATATCAATTCTTCATCCTCCTGGTGATGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCACACAGTAGAGAGTATAGTACTGAGTATCATATCCATGCTTTCCAGTCCTAATGATGAATCCCCGGCAAATGTTGAAGCTGCAAAAGAGTGGAGAGATACTAGAGATGAATTCAAGAAAAAGGTTAGCCGCTGTGTAAGGAAGTCACAAGAAATGTGGTGA 501 0.4411 MASQASLLLQKQLKDLCKHPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTIKFTSELWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDTRDEFKKKVSRCVRKSQEMW 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0109 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
Lal8g0109 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 165 - -
Lal8g0109 166 SMART ubc_7 7 164 - -
Lal8g0109 166 Gene3D Ubiquitin Conjugating Enzyme 2 165 IPR016135 -
Lal8g0109 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
Lal8g0109 166 CDD UBCc 17 159 IPR000608 -
Lal8g0109 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Lal8g0109 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 2 165 - -
Lal8g0109 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0109 Lal-Chr8 771897 776249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0109 11 147 Miscellaneous Gene Families AT3G17000 28.276 8.78e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0109 K10575 - gmx:100782328 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0109 8 771897 776249 Lal8g0109 8 771897 776249 ECH
Lal8g0109 8 771897 776249 Lal1g0333 1 2007181 2012333 PCT
Lal1g0333 1 2007181 2012333 Lal8g0109 8 771897 776249 PCT