Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0333 ATGACATCCCAAGCCAGCCTTCTCCTTCAAAAGCAACTCAAAGATCTTTGCAAACACCCTGTTGATGGGTTTTCCGCTGGTTTGGTGGATGAAAGCAACATCTTTGAATGGAGTGTCACCATAATTGGACCTCCTGATACTCTTTATGAGGGGGGGTTTTTCAATGCTATTATGAGTTTCCCTTCCAATTACCCGAATAGTCCACCAACAGTGAAATTCACCTCAGAGATATGGCACCCCAATGTATATTCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGATGATCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGATGCCTGTTCATACAGTGGAGAGTATAGTATTGAGTATCATATCAATGCTTTCTAGCCCCAATGATGAGTCTCCTGCAAATGTCGAAGCTGCAAAGGAGTGGAGAGATAGGAGAGAAGATTTCAAGAAAAAGGTTAGCAGATGCGTTAGGAAGTCACAAGAAATGTTGTAA 501 0.4311 MTSQASLLLQKQLKDLCKHPVDGFSAGLVDESNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTSEIWHPNVYSDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRREDFKKKVSRCVRKSQEML 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0333 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Lal1g0333 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
Lal1g0333 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 166 - -
Lal1g0333 166 SMART ubc_7 7 164 - -
Lal1g0333 166 Gene3D Ubiquitin Conjugating Enzyme 2 166 IPR016135 -
Lal1g0333 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 3 166 - -
Lal1g0333 166 CDD UBCc 17 159 IPR000608 -
Lal1g0333 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Lal1g0333 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0333 Lal-Chr1 2007181 2012333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0333 11 131 Miscellaneous Gene Families AT3G17000 30.952 5.93e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0333 K10575 - rcu:8281879 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0333 1 2007181 2012333 Lal1g0333 1 2007181 2012333 ECH
Lal8g0109 8 771897 776249 Lal1g0333 1 2007181 2012333 PCT
Lal1g0333 1 2007181 2012333 Lal8g0109 8 771897 776249 PCT