Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0059 ATGGCTAAGATTTCTAGTTTCTTTGTGACTTTTTTGTTGGTTGGTTTGGCTGCTTCTGCCAAGTTTGATGAACTTTTCCAACCTAGTTGGGCTAATGACCATTTCATCCATGAAGGGGAATTACTCAAACTTAAACTTGATAACTATTCTGGTGCTGGTTTTGGGTCCAAAAGCAAGTATATGTTTGGGAAAGTGACCATCCAGCTTAAGCTTGTGGAAGGTGACTCTGCTGGAACAGTTACTGCTGTCTATATGTCATCGGAGGGTCCAAACCACAATGAATTTGATTTTGAGTTTTTGGGGAATACAAGTGGAGAACCTTACTCGGTTCAAACCAATGTTTATGTGAATGGATTGGGTAATAGAGAGCAGAGACTCAACCTTTGGTTCGACCCCACCAACGACTTCCACAACTACTCTATCTTCTGGAACCAGCGCCAAGTTGTATTCTTGGTTGATGAGACACCAATAAGAGTACACACAAATCTAGAACACAAAGGTATTCCTTTCCCAAAAGACCAAGCAATGGGTGTATATAGTTCAATATGGAACGCTGATGATTGGGCCACACAAGGTGGTCGTGTGAAGACAGATTGGAGCCATGCACCATTCATAGCCACATTCAAGGACTTTGAAATCAATGCATGTGAATGCCCAGTGCCAATGACAGAAATGGACAATGCTAAGAAATGCAAAAGCAGTGATGATAAGAAGTATTGGTGGGATGAGCCTACATTGTCAGAGCTCAACTTGCATCAAAGTCACCAGCTTATATGGGTTAGGGCTAACCATATGGTCTATGACTATTGTTTTGACAATGCTAGGTTCCCAGTTACACCTGCTGAGTGTGCCCATCACCACCACTAA 867 0.4233 MAKISSFFVTFLLVGLAASAKFDELFQPSWANDHFIHEGELLKLKLDNYSGAGFGSKSKYMFGKVTIQLKLVEGDSAGTVTAVYMSSEGPNHNEFDFEFLGNTSGEPYSVQTNVYVNGLGNREQRLNLWFDPTNDFHNYSIFWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIATFKDFEINACECPVPMTEMDNAKKCKSSDDKKYWWDEPTLSELNLHQSHQLIWVRANHMVYDYCFDNARFPVTPAECAHHHH 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0059 288 CDD GH16_XET 17 283 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lal8g0059 288 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 15 286 - -
Lal8g0059 288 Pfam Glycosyl hydrolases family 16 25 200 IPR000757 GO:0004553|GO:0005975
Lal8g0059 288 Gene3D - 12 288 - -
Lal8g0059 288 PRINTS Glycosyl hydrolase family 16 signature 52 70 IPR008264 GO:0004553|GO:0005975
Lal8g0059 288 PRINTS Glycosyl hydrolase family 16 signature 110 123 IPR008264 GO:0004553|GO:0005975
Lal8g0059 288 PRINTS Glycosyl hydrolase family 16 signature 128 145 IPR008264 GO:0004553|GO:0005975
Lal8g0059 288 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 237 283 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lal8g0059 288 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 286 IPR013320 -
Lal8g0059 288 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 5 208 IPR000757 GO:0004553|GO:0005975
Lal8g0059 288 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 15 286 IPR044791 GO:0004553
Lal8g0059 288 PIRSF EndGlu_transf 1 288 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0059 Lal-Chr8 474553 477084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0059 52 288 Glycoside Hydrolase AT4G03210 76.371 2.19e-142 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0059 K08235 - gmx:100527891 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0429 2 2564446 2566981 Lal8g0059 8 474553 477084 PCT