Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0429 ATGTCTAAGGTTTCTGGGTTTTTGAGGTTGTTTGTGGGTCTTGTTTTGTTGGGGGTGGCTGTGGCTGTGTCTTCCAAGTTTGATCAACTTTTTCAATCAACATGGGCTTCTGATCATTTAGTTCATGAAGGAAATTTCCTCAAACTCAAACTTGATAATTATTCTGGGGCTGCTTTTGGATCGAAAAGCAAGTATATGTTTGGAAAAGTGACCATCCAGCTTAAGCTTGTGGAAGGTGACTCTGCTGGGACAGTTACTGCTTTCTATATGTCATCGGAGGGTCCAACTCATAATGAGTTTGATTTTGAATTCTTGGGCAACACCACAGGGGAACCTTACTCTGTACAAACCAACGTGTATGTAAATGGTGTGGGCAATAGAGAGCAGAGACTCGACCTATGGTTCGATCCAACCAAGGACTTTCACTCATACTCCATCTTTTGGAACCAACGTCAAGTTGTATTTCTAATAGATGAGACACCAATTCGAGTGCATACAAATATGGAACACAAGGGAATTCCATATCCTAAGGACCAACCAATGGGAGTATATAGTTCTATATGGAATGCAGATGATTGGGCTACACAGGGAGGTCGTGTGAAAACAGATTGGAGCCATGCACCATTCTTTGCTACATATAAGTCCTTTGAAATCAAAGCCTGTGAGTGCCTTGTATCTGTTGCTGCAATTGAAAACTCCAAGAGGTGTAGCAGCAGTGTGGATAGGAAATATTGGTGGGATGAGCCTACATTGTCTGTGCTCAACTTGCACCAAATCCACCAGCTTATGTGGGTTAGGGCCAAACATATGGTATATGACTATTGCTCTGACACTGCTAGATTCCCAGTTACACCAGCTGAGTGTGTTCATCACCATCACCTGTGA 885 0.4271 MSKVSGFLRLFVGLVLLGVAVAVSSKFDQLFQSTWASDHLVHEGNFLKLKLDNYSGAAFGSKSKYMFGKVTIQLKLVEGDSAGTVTAFYMSSEGPTHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLDLWFDPTKDFHSYSIFWNQRQVVFLIDETPIRVHTNMEHKGIPYPKDQPMGVYSSIWNADDWATQGGRVKTDWSHAPFFATYKSFEIKACECLVSVAAIENSKRCSSSVDRKYWWDEPTLSVLNLHQIHQLMWVRAKHMVYDYCSDTARFPVTPAECVHHHHL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0429 294 PIRSF EndGlu_transf 2 293 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lal2g0429 294 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 243 288 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lal2g0429 294 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 15 292 - -
Lal2g0429 294 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 292 IPR013320 -
Lal2g0429 294 PRINTS Glycosyl hydrolase family 16 signature 57 75 IPR008264 GO:0004553|GO:0005975
Lal2g0429 294 PRINTS Glycosyl hydrolase family 16 signature 115 128 IPR008264 GO:0004553|GO:0005975
Lal2g0429 294 PRINTS Glycosyl hydrolase family 16 signature 133 150 IPR008264 GO:0004553|GO:0005975
Lal2g0429 294 CDD GH16_XET 22 288 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lal2g0429 294 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 15 292 IPR044791 GO:0004553
Lal2g0429 294 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 25 213 IPR000757 GO:0004553|GO:0005975
Lal2g0429 294 Gene3D - 15 294 - -
Lal2g0429 294 Pfam Glycosyl hydrolases family 16 29 205 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0429 Lal-Chr2 2564446 2566981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g0429 57 294 Glycoside Hydrolase AT4G03210 72.689 1.70e-135 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0429 K08235 - gmx:100785982 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0429 2 2564446 2566981 Lal8g0059 8 474553 477084 PCT