Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1379 ATGTCTGCAACTTCTTTGTGTTCATCAACCCTTCAATCCCAAATCAATGGACTCAACAACCACCTTCACAAAACTTCTCATTTTCAACCCCGATCCCTCACTTTTTCAAGAAGGAAAATCTCAACCATTGTGAAGGCTTCATCTCGTGTTGACAAGTTTTCAAAAAGCGATATCATTGTTTCTCCATCAATTCTTTCTGCTAACTTTTCCAAATTGGGAGAGCAGTTTGGGTCATCACCTGTGCAGGTGAAAGCAATAGAGTTGGCAGGTTGTGATTGGATTCATGTTGATGTAATGGATGGTCGCTTTGTCCCAAATATTACAATTGGGCCTCTTGTGGTTGATGCATTGCGCCCTGTGACAGATCTTCCTTTAGATGTGCACCTGATGATTGTAGAACCTGAACAGCGGGTGCCAGATTTTATCAAGGCAGGGGCTGACATAGTCAGCATTCATGCTGAGCAATCTTCCACCATTCATTTGCATCGTACAGTCAATCAAGTGAAAAGCCTGGGAGCTAAAGCTGGAGTTGTCCTAAACCCTGGTACCCCCCTAAGTGCAATAGAATACGTCCTTGATGTGGTTGATTTGGTCTTAATTATGTCTGTAAACCCTGGCTTTGGTGGCCAGAGTTTTATTGAGAGCCAAGTCAAGAAAATTTCTGATTTGAGAAGGTTGTGCGTGGAGAAGGGAGTGAATCCGTGGATTGAAGTGGATGGTGGAGTTGGTCCAAAAAATGCTTACAAGGTGATTGAGGCTGGAGCTAATGCTCTGGTTGCTGGTTCTGCTGTGTTTGGAGCTAAAGATTATGCTGAAGCCATTAGAGGAATCAAAACCAGCAAAAGACCTGAGCCGGTTGCGGTGTGA 867 0.4394 MSATSLCSSTLQSQINGLNNHLHKTSHFQPRSLTFSRRKISTIVKASSRVDKFSKSDIIVSPSILSANFSKLGEQFGSSPVQVKAIELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSIHAEQSSTIHLHRTVNQVKSLGAKAGVVLNPGTPLSAIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCVEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIRGIKTSKRPEPVAV 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1379 288 Pfam Ribulose-phosphate 3 epimerase family 60 265 IPR000056 GO:0005975|GO:0016857
Lal7g1379 288 SUPERFAMILY Ribulose-phoshate binding barrel 52 281 IPR011060 -
Lal7g1379 288 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 198 220 IPR000056 GO:0005975|GO:0016857
Lal7g1379 288 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 94 108 IPR000056 GO:0005975|GO:0016857
Lal7g1379 288 PANTHER - 17 275 - -
Lal7g1379 288 TIGRFAM rpe: ribulose-phosphate 3-epimerase 60 278 IPR026019 GO:0004750|GO:0006098
Lal7g1379 288 Gene3D Aldolase class I 48 284 IPR013785 -
Lal7g1379 288 Hamap Ribulose-phosphate 3-epimerase [rpe]. 57 280 IPR026019 GO:0004750|GO:0006098
Lal7g1379 288 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 17 275 IPR000056 GO:0005975|GO:0016857
Lal7g1379 288 CDD RPE 59 278 IPR000056 GO:0005975|GO:0016857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1379 Lal-Chr7 18854064 18859137 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1379 K01783 - gmx:100786514 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1379 7 18854064 18859137 Lal7g1379 7 18854064 18859137 ECH
Lal7g1379 7 18854064 18859137 Lal19g1469 19 17201715 17206280 LSH