Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1469 ATGGGTGCAACTTGTTTGTGTTCATCAACCCTTCAATCCCAATTCAATGGACCCAACAACCACCTTCTCAAAATTTCTCCTTTTCAACCCCAAAAACTCACTTTCTCCAGGAGGAAGATCTCAACCATGGTGAAGGCTTCATCTCGTGTTGACAAGTTTTCAAAAAGCGATATCATTGTTTCTCCATCTATTCTTTCTGCTAACTTTTCAAAATTGGGAGAGCAGGTCAAAGCAGTGGAGTTGGCAGGTTGTGATTGGATTCATGTTGATGTAATGGATGGTCGCTTTGTACCAAATATTACAATCGGGCCTCTTGTGGTTGATGCATTGCGACCTGTGACTGATCTTCCTTTGGATGTGCACCTGATGATTGTAGAACCTGAACAGCGGGTGCCGGATTTTATCAAGGCAGGGGCTGACATAGTCAGTGTTCACGCTGAGCAATCTTCTACCATCCATTTGCATCGTACAGTTAATCAAGTGAAAAGCCTGGGAGCTAAAGCTGGAGTTGTCCTAAACCCTGGTACCCCCCTAAGTGCAATAGAATATGTCCTTGATGTGGTTGATTTGGTTTTAATTATGTCTGTAAACCCTGGCTTTGGTGGCCAGAGTTTTATTGAGAGCCAAGTCAAGAAAATTTCTGATTTGAGAAGACTATGCATGGAGAAGGGAGTGAATCCATGGATTGAAGTGGATGGTGGAGTTGGTCCAAAAAATGCTTACAAGGTGATTGAGGCTGGAGCTAATGCTCTGGTTGCTGGTTCGGCTGTGTTTGGAGCTAAAGATTATGCTGAAGCCATAAGAGGAATCAAAACCAGCAAAAGACCCTAA 831 0.4344 MGATCLCSSTLQSQFNGPNNHLLKISPFQPQKLTFSRRKISTMVKASSRVDKFSKSDIIVSPSILSANFSKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHAEQSSTIHLHRTVNQVKSLGAKAGVVLNPGTPLSAIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCMEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIRGIKTSKRP 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1469 276 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 20 268 IPR000056 GO:0005975|GO:0016857
Lal19g1469 276 PANTHER - 20 268 - -
Lal19g1469 276 SUPERFAMILY Ribulose-phoshate binding barrel 52 273 IPR011060 -
Lal19g1469 276 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 191 213 IPR000056 GO:0005975|GO:0016857
Lal19g1469 276 Gene3D Aldolase class I 48 276 IPR013785 -
Lal19g1469 276 Hamap Ribulose-phosphate 3-epimerase [rpe]. 57 273 IPR026019 GO:0004750|GO:0006098
Lal19g1469 276 TIGRFAM rpe: ribulose-phosphate 3-epimerase 60 271 IPR026019 GO:0004750|GO:0006098
Lal19g1469 276 CDD RPE 59 271 IPR000056 GO:0005975|GO:0016857
Lal19g1469 276 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 87 101 IPR000056 GO:0005975|GO:0016857
Lal19g1469 276 Pfam Ribulose-phosphate 3 epimerase family 60 258 IPR000056 GO:0005975|GO:0016857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1469 Lal-Chr19 17201715 17206280 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1469 K01783 - gmx:100817791 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1469 19 17201715 17206280 Lal19g1469 19 17201715 17206280 ECH
Lal7g1379 7 18854064 18859137 Lal19g1469 19 17201715 17206280 LSH