Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1306 ATGGCTGAAAACTTCGATCAACTCCACAATAAACTCCCCGAACTTAAACTAGATTCTAAGCAAGCACAAGGATTTCTATCATTTTACAAAACCCTACCTAGTGATCCAAGAGCTATTCGGTTTTTCAATCGCCGGGACTACTATACTGCTCATGGTGAGAATGCAACTTTCGTTGCTAAGACCTACTACCGCACTACTACTGCTTTGCGACAACTGAGTAGTGGACCAGATGCTCTTTCTAGTGTAAGTGTCAGTAAGAACATGTTTGAAACAATTGCCCGTGATCTACTTTTGGAGAGAACAGACCATACTCTGGAGCTCTATGAAGGAAATACATCTAATTGGAAACTGGTTAAAAGTGGAACACCTGGTAATATTGGCAGTTTTGAAGATGTTCTCTTTGCTAACTCTGAAATGCAAGATTCTCCGGCTGTTGTTGCGTTGTCACTTTACTTCCGTGAAAATTGTTGCACTGTTGGGTTAGGATTTGTTGATCTAACTAGGAGAGTACTTGGGATGGCTGAATTCCTTGATGACAGCCACTTCACTAATGTGGAGTCAGCATTGGTTGCTCTTGGCTGCAAAGAGTGCATTCTGCCTATTGAGTGTGACAAATCTGTCGAGAATAGAGTGTTGCGTGATGCTTTGACTAAATGTGGTGTGATGTTGACTGAGAGGAAGAAAACTGAGTTCAAAACAAGGGATCTAGTACAGGATCTTGGCAGGCTTGTTAAAGGCTCTCTGGAACCAGTACGAGATTTAGTGGCTGGATTTGAATTTGCACCTGGTGCTCTGGGGGCATTATTATCTTATACTGAGTTACTTGCGGATGAAAGCAATTATGGAAATTATACACTTCGTAGGTACAATCTTGACAATTACATGAGATTAGACTCTGCAGCCATGACAGCTCTGAATGTTCTAGAAAGCAAAACTGATGCAAACAAAAATTTCAGTTTGTTTGGTCTCATGAACAAAACTTGTACAGTTGGGATGGGAAAACGGTTATTGCACATGTGGCTAAAACAGCCCTTAGTAGATGTAATAGAAATTAATTCCAGGCTGGATGTAGTACAAGCATTTGTAGAGGACACTTTGCTTCGCCAAGATCTGCAACAGCATCTAAAAAGAATATCAGACATTGAGCGATTGGTGCACAATCTTCAGAAGCAAAGAGCTGGCCTGCATCATATTGTTAAACTTTATCAGTCAAGCATAAGAATACCTTACATCAAAAGTGCTCTGGAAAATTACGATGGACAATTTTCCTCAATGATGAGGAAAAGGTATTTGGAACCTCTTGAGTTATGGACTGATGATGATCACCTAAACAAATTCATCGGCCTTGTTGAAGTTTCTGTTGACCTTGATCAACTGGAGAATAGGGAATACATGATTTCTTCAGGTTATGACCCTAGACTGTCTAAACTTAAGGAGCAACAGGAGTTAATAGAAAGCCAAATACATGACTTGCATAGACAAACTGCTGATGGTCTTGATCTGCCTATAGATAAGGCATTGAAGTTAGACAAGGGCACTCAATTTGGACATGTTTTCAGAATCACAAAGAAGGAAGAGCCGAAAATAAGGAAAAAGCTCAGTACCCAGTTCATTGTACTGGAAACCCGTAAAGATGGAGTGAAATTTACCAACACGAAGCTCAAGAAACTGGGGGACCAGTATCAGCGGATAGTTGAAGAGTACAAGAATTGTCAAAAAGAGTTGGTTAATAAAGTAGTTCAAACTGCAGCAACATTCTCTGAGGTTTTTGACTCTCTAGCTGAGTTAATAGCTGAACTGGACGTGTTACTAAGCTTTGCTAATTTGGCTTCTAGCTGTCCTACTCCCTACACAAGGCCTTACATCACTTCATCGGATGAAGGAGATATTATTTTAGAAGGCAGCAGACACCCTTGTGTGGAGGCACAAGGCTTGGTGAATTTTATGCCAAACGATTGTAAGCTTATCAGAGGGAAAAGCTGGTTTCAAATAATAACAGGGCCTAACATGGGTGGGAAGTCAACATTCATCCGACAGGTGGGTGTTAATGTTTTGATGGCACAAGTTGGTTCCTTTGTTCCTTGTGACAAAGCCAGCATATCTATTCGTGATTGCATTTTTGCCCGTGTTGGTGCTGGTGACTGCCAACTTCGTGGAGTTTCTACCTTTATGCAAGAAATGCTTGAAACTTCATCAATATTAAAAGGAGCCACAGACAAGTCCTTGATAATCATTGATGAATTGGGACGTGGGACATCAACTTATGATGGATTTGGTCTAGCATGGGCCATTTGTGAGCACATTGTTAAATTGATCAAAGCGCCTACTTTGTTTGCTACACACTTTCATGAACTGACTGCATTAGCCCTTAAGAATGTAAGAGATGATCAACCTAAACAAATTGTTGGTGTGGTAAACTATCATGTTAGCGCAAATATTGATGCATCAACTCGCAAGCTAACTATGCTATACAAGGTTGAACCAGGAGCTTGTGATCAAAGTTTTGGTATTCATGTGGCTGAATTTGCTAACTTCCCTGAAAGTGTTATTGCCCTAGCTATGGAAAAGGCTGCGGAATTGGAAGATTTTTCTCCTTCTGCAATATACTTAACTGATACTATTAAGGAGGTGGGTTCTAAACGTAAGAGGGTAGCATTTGAACCTAGTGAAATAATTCAAGGGGCTGCAAGGGCTCGCAAACTATTTGAAGCATTTCTTGCTTTGCCAATGGGTAGCATGGATAGAAGGAAAATTTTTGAACAAGTAAGGATGTTGACAGATAAGTTAGAGAAGGATGCAGAAAACTGTCATTGGCTGCAACGGTTCTTTTAA 2832 0.4047 MAENFDQLHNKLPELKLDSKQAQGFLSFYKTLPSDPRAIRFFNRRDYYTAHGENATFVAKTYYRTTTALRQLSSGPDALSSVSVSKNMFETIARDLLLERTDHTLELYEGNTSNWKLVKSGTPGNIGSFEDVLFANSEMQDSPAVVALSLYFRENCCTVGLGFVDLTRRVLGMAEFLDDSHFTNVESALVALGCKECILPIECDKSVENRVLRDALTKCGVMLTERKKTEFKTRDLVQDLGRLVKGSLEPVRDLVAGFEFAPGALGALLSYTELLADESNYGNYTLRRYNLDNYMRLDSAAMTALNVLESKTDANKNFSLFGLMNKTCTVGMGKRLLHMWLKQPLVDVIEINSRLDVVQAFVEDTLLRQDLQQHLKRISDIERLVHNLQKQRAGLHHIVKLYQSSIRIPYIKSALENYDGQFSSMMRKRYLEPLELWTDDDHLNKFIGLVEVSVDLDQLENREYMISSGYDPRLSKLKEQQELIESQIHDLHRQTADGLDLPIDKALKLDKGTQFGHVFRITKKEEPKIRKKLSTQFIVLETRKDGVKFTNTKLKKLGDQYQRIVEEYKNCQKELVNKVVQTAATFSEVFDSLAELIAELDVLLSFANLASSCPTPYTRPYITSSDEGDIILEGSRHPCVEAQGLVNFMPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNVLMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVSTFMQEMLETSSILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVKLIKAPTLFATHFHELTALALKNVRDDQPKQIVGVVNYHVSANIDASTRKLTMLYKVEPGACDQSFGIHVAEFANFPESVIALAMEKAAELEDFSPSAIYLTDTIKEVGSKRKRVAFEPSEIIQGAARARKLFEAFLALPMGSMDRRKIFEQVRMLTDKLEKDAENCHWLQRFF 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1306 943 PANTHER DNA MISMATCH REPAIR PROTEIN MSH2 24 908 IPR032642 GO:0003677|GO:0005524|GO:0006298|GO:0032300
Lal7g1306 943 Coils Coil 371 391 - -
Lal7g1306 943 ProSitePatterns DNA mismatch repair proteins mutS family signature. 741 757 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lal7g1306 943 Gene3D - 618 939 IPR027417 -
Lal7g1306 943 Pfam MutS domain I 24 129 IPR007695 GO:0005524|GO:0006298|GO:0030983
Lal7g1306 943 Gene3D - 295 523 - -
Lal7g1306 943 Gene3D - 524 617 - -
Lal7g1306 943 SMART DNAend 315 643 IPR007696 GO:0005524|GO:0006298|GO:0030983
Lal7g1306 943 Pfam MutS domain V 663 861 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lal7g1306 943 SUPERFAMILY DNA repair protein MutS, domain III 298 612 IPR036187 -
Lal7g1306 943 PIRSF MSH2 8 943 IPR011184 GO:0005524|GO:0006298|GO:0030983
Lal7g1306 943 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 24 908 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Lal7g1306 943 Gene3D MutS, connector domain 123 292 IPR036678 GO:0005524|GO:0006298|GO:0030983
Lal7g1306 943 SMART mutATP5 660 858 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lal7g1306 943 Pfam MutS domain II 150 284 IPR007860 GO:0005524|GO:0006298|GO:0030983
Lal7g1306 943 CDD ABC_MSH2_euk 631 861 - -
Lal7g1306 943 Pfam MutS family domain IV 469 566 IPR007861 GO:0005524|GO:0006298|GO:0030983
Lal7g1306 943 Coils Coil 554 574 - -
Lal7g1306 943 Gene3D DNA repair protein MutS, domain I 9 122 IPR016151 GO:0005524|GO:0006298|GO:0030983
Lal7g1306 943 Coils Coil 474 494 - -
Lal7g1306 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 862 IPR027417 -
Lal7g1306 943 Pfam MutS domain III 301 607 IPR007696 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1306 Lal-Chr7 18414190 18422266 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1306 K08735 - gmx:100792272 1622.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1306 7 18414190 18422266 Lal7g1306 7 18414190 18422266 ECH
Lal7g1306 7 18414190 18422266 Lal19g1415 19 16852486 16860523 LSH