Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1415 ATGGCTGAAAACTTCCATCAACTCCACAATAACCTTCCTGAGCTTAAATTAGATTCTAGGCAAGCGCAAGGGTTTTTATCGTTCTTCAAAAACATACCTAAGGATCCGAGGGCAATTCGATTTTTCGATCGCCGGGATTACTATACTGCTCATGGTGAGAATGCAACTTTCATTGCTAAGACCTACTACCACACTACTACTGCTTTGCGACAACTGGGTAGTGGATCAGATGCTCTTTCTAGTGTCAGTGTCAGTAAGAACATGTTTGAAACAATTGTCCGTGATCTACTTTTGGAGAGAACAGACCATACCCTTGAGCTCTATGAAGGAAGTGGTTCTAATTGGAAACTGGTCAAAAGTGGAACACCTGGTAATATTGGCAGTTTTGAAGATGTTCTTTTTGCTAATTCTGAAATGCAAGATTCTCCTGCCGTTGTTGCACTGTCACTTAACTACAGTGAAAATGGGTGCACTGTTGGGCTAGGATTTGTTGATCTAACTAAGAGAGTACTTGCGATGGCTGAATTCCTTGATGATAGTCACTTCACAAATGTAGAGTCAGCAATGGTTGCTCTTGGCTGCAAAGAGTGCATTCTGCCTAGTGAGTGTGGGAAACCTGTTGAAAATAGAATGTTGCACGATGCAATGACTAAATGTGGTGTGATGTTAACTGAGAGGAAGAAATCTGAGTTCAAAACCAGGGATCTAGTACAGGATCTTGGCAGGCTTGTTAAAGGCTCTATTGAACCAGTACGCGATTTAGTGGCTGGATTTGAATTTGCACCCGGTGCTTTGGGGGCATTATTATTGTATACAGAGTTGCTTGCAGATGAAAGCAATTATGGAAATTATACACTTCGTAGGTACAATCTTGACAGTTACATGAGGTTAGACTCTGCAGCCATGAGGGCTCTTAATGTTCTGGAAAGCAAAACTGATGCAAACAAATATTTCAGTTTGTTTGGTCTCATGAATAAAACCTGTACGGCTGGAATGGGAAAACGGTTATTGCACATGTGGCTAAAACAGCCCTTAGTAGATGTAAAAGAAATTAATTCCAGACTGGATGTAGTCCAAGCATTTGTAGAGGATACTCTGCTTCGCCAAGATCTGCAACGGCATCTAAAAAGAATATCAGACATTGAGCGATTGGTGCACAATCTTCACAAGCGAAAAGCTGGTTTGCATCATATTGTTAAACTTTATCAGTCAAGCATAAGAGTACCTTACATTAAAAGTGCTCTGGAAAACTATGATGGACAGTTTTCATCAATGATGAGGAGCAGGTATTTTGAACCTCTTGAGTTATGGACTGATGATGATCACCTAAACAAATTCATTGGACTTGTGGAAGTTTCGGTTGACCTTGATCAACTGGAGAACGGGGAATACATGATTTCTTCAAGTTATGACCCTAGACTATCTAAACTTCAGGAAGAGCTGGAGTTACTAGAGAGCCAAATACATGACTTGCATAGACAAACTGCTGATAATCTTGATCTGCCTATAGACAAGGCATTGAAATTAGACAAGGGCACTCAATTTGGATATGTTTTCAGAATCACAAAGAAGGAAGAGCCAAAAATAAGGAAAAAGCTCAGTGCCCAGTTCCTTGTACTGGAAACCCGTAAAGATGGAGTAAAATTTACCAACACGAAGCTCAAGAAACTGGGAGACCAATATCAACAGATAGTTGAGGAGTACAAGAGTTGTCAAAAAGAGTTGGTTAATAAAGTAGTTCAAACTGCAGCAACATTCTCTGAGGTTTTTGAGTCTTTAGCTGAATTAATAGCTGAATTGGATGTGTTACTAAGCTTTGCTGTTTTGGCTTCTAGCTGTCCTACTCCCTACACAAGGCCTGTCATCACTTCATCGGATGAAGGAGATATTATCTTAGAAGGCAGCAGACACCCTTGTGTGGAGGCACAAGACTGGGTGAATTTTATACAAAATGATTGTAAGCTTATCAGAGGAAAAAGTTGGTTTCAAATAATTACAGGGCCTAACATGGGTGGGAAGTCGACATTCATCCGACAGGTCGGTGTTAATATTTTGATGGCACAAGTTGGTTCCTTTGTTCCTTGTGACAAAGCCTACATATCTGTTCGTGCTTGCATTTTTGCCCGCGTTGGTGCTGGTGACTGCCAACTTCGTGGAGTTTCTACCTTCATGCAAGAAATGCTTGAAACGACATCAATATTAAAAGGAGCCACAGACAAGTCCTTGATAATCATTGATGAATTGGGACGTGGTACATCAACTTATGATGGATTTGGTCTAGCTTGGGCCATTTGTGAGCACATTGTTAAATTGATCAAAGCACCTACTTTGTTTGCTACTCACTTTCACGAACTGACTGCATTAGGCCTTGGGAATGTAGGGCTTGATCAACATAAGCAAGTTGTTGGTGTGGTGAACTATCATGTTAGTGCAGAGATTGATGCATCAACTCGTAAGCTAACTATGCTATACAAGTCTGTCCTAATGCTGCAATTCTGGTCATATAAATCTTACAGGTCCCTTGTTATTGTTGATTATACTACATCCATTAAAGATGTCAATATTTCAGATGGCTTGGTTGAACCAGGAGCTTGTGATCAAAGTTTTGGTATTCATGTGGCTGAATTTGCAAACTTCCCTGAAAGTGTTGTTGCCCTAGCTAGAGAAAAGGCTGTGGAATTGGAAGATTTTTCTCCTGCAATATGCTTAACTGATACTACAAAGGAGGTAGGTTCTAAACGTAAGAGAGGAGCATTTGAAGCTGATGAAATAATATCTGAAGAGGCTGCAAGGGCTAGGCAATTTTTTGAAGCATTTCTTGCTTTGCCAGTAGATAGCAATGATAAAAGACAAACTTTGGAACAAGTAAGGAAGTTCAAGGATAATTTAGATAAGGATGCAGAAAACTGTCATTGGCTGCAACGGTTCTTGTAG 2934 0.4029 MAENFHQLHNNLPELKLDSRQAQGFLSFFKNIPKDPRAIRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGSGSDALSSVSVSKNMFETIVRDLLLERTDHTLELYEGSGSNWKLVKSGTPGNIGSFEDVLFANSEMQDSPAVVALSLNYSENGCTVGLGFVDLTKRVLAMAEFLDDSHFTNVESAMVALGCKECILPSECGKPVENRMLHDAMTKCGVMLTERKKSEFKTRDLVQDLGRLVKGSIEPVRDLVAGFEFAPGALGALLLYTELLADESNYGNYTLRRYNLDSYMRLDSAAMRALNVLESKTDANKYFSLFGLMNKTCTAGMGKRLLHMWLKQPLVDVKEINSRLDVVQAFVEDTLLRQDLQRHLKRISDIERLVHNLHKRKAGLHHIVKLYQSSIRVPYIKSALENYDGQFSSMMRSRYFEPLELWTDDDHLNKFIGLVEVSVDLDQLENGEYMISSSYDPRLSKLQEELELLESQIHDLHRQTADNLDLPIDKALKLDKGTQFGYVFRITKKEEPKIRKKLSAQFLVLETRKDGVKFTNTKLKKLGDQYQQIVEEYKSCQKELVNKVVQTAATFSEVFESLAELIAELDVLLSFAVLASSCPTPYTRPVITSSDEGDIILEGSRHPCVEAQDWVNFIQNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKAYISVRACIFARVGAGDCQLRGVSTFMQEMLETTSILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVKLIKAPTLFATHFHELTALGLGNVGLDQHKQVVGVVNYHVSAEIDASTRKLTMLYKSVLMLQFWSYKSYRSLVIVDYTTSIKDVNISDGLVEPGACDQSFGIHVAEFANFPESVVALAREKAVELEDFSPAICLTDTTKEVGSKRKRGAFEADEIISEEAARARQFFEAFLALPVDSNDKRQTLEQVRKFKDNLDKDAENCHWLQRFL 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1415 977 SMART DNAend 315 643 IPR007696 GO:0005524|GO:0006298|GO:0030983
Lal19g1415 977 PANTHER DNA MISMATCH REPAIR PROTEIN MSH2 24 959 IPR032642 GO:0003677|GO:0005524|GO:0006298|GO:0032300
Lal19g1415 977 Gene3D DNA repair protein MutS, domain I 9 122 IPR016151 GO:0005524|GO:0006298|GO:0030983
Lal19g1415 977 ProSitePatterns DNA mismatch repair proteins mutS family signature. 741 757 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lal19g1415 977 Pfam MutS domain V 663 895 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lal19g1415 977 CDD ABC_MSH2_euk 631 895 - -
Lal19g1415 977 Pfam MutS domain III 301 607 IPR007696 GO:0005524|GO:0006298|GO:0030983
Lal19g1415 977 PIRSF MSH2 844 977 IPR011184 GO:0005524|GO:0006298|GO:0030983
Lal19g1415 977 PIRSF MSH2 8 828 IPR011184 GO:0005524|GO:0006298|GO:0030983
Lal19g1415 977 Coils Coil 554 574 - -
Lal19g1415 977 Coils Coil 474 494 - -
Lal19g1415 977 Pfam MutS domain II 147 284 IPR007860 GO:0005524|GO:0006298|GO:0030983
Lal19g1415 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 896 IPR027417 -
Lal19g1415 977 Pfam MutS domain I 24 129 IPR007695 GO:0005524|GO:0006298|GO:0030983
Lal19g1415 977 Gene3D - 295 524 - -
Lal19g1415 977 Gene3D - 525 617 - -
Lal19g1415 977 SUPERFAMILY DNA repair protein MutS, domain III 298 612 IPR036187 -
Lal19g1415 977 Pfam MutS family domain IV 470 566 IPR007861 GO:0005524|GO:0006298|GO:0030983
Lal19g1415 977 SMART mutATP5 660 892 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lal19g1415 977 Gene3D MutS, connector domain 123 292 IPR036678 GO:0005524|GO:0006298|GO:0030983
Lal19g1415 977 Gene3D - 618 973 IPR027417 -
Lal19g1415 977 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 24 959 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1415 Lal-Chr19 16852486 16860523 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1415 K08735 - gmx:100792272 1571.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1415 19 16852486 16860523 Lal19g1415 19 16852486 16860523 ECH
Lal7g1306 7 18414190 18422266 Lal19g1415 19 16852486 16860523 LSH