Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1097 ATGGCCACCGTACAATCAATCCAGAACGCTAACCACCCAACCGATGAACCACAATCCGAACCAGCTCCGGAGAGAAGGTGGCCGGGTTGGCCCGGCCACTGCGTGTTCCGGCTGATTGTGCCGGTGGTGAAGGTAGGAAGCATAATCGGGCGCAAGGGGGAGCTCGTGAAGAAAACATGTGAAGAGACTCGAGCTCGTATTCGTGTTCTGGATGGCGCTGATGCTACCTCTGATCGAATCGTAGTCATATCGGGGAAGGAAGAACTTGAGGCAGATCTTTCTCCTGCAATGGTTGCTGTCATAAGGATTTTTAAACGTGTCTCAGGATTATCTGAAACTGATGGTGAAAATCTGTCAGGAGCTGCTGGTATTGCCTTCTGTTCTGTTCGTTTATTGGTGGCATCAACACAGGCTATTAATTTGATTGGAAAGCAAGGCTCATTAATTAAGTCCATACAGGAAAAATCTGGTGCTTCTGCTAGAATATTGTCAGGAGACGAGGTGCCATTTTATGCTGCTGCGGATGAGAGGATTGTGGAACTACAGGGAGAAGCCTCAAAGGTCCTTAAGGCTCTGGAAGCTGTCGTTGGGCACCTGAGGAAGTTTTTGGTTGATCAAAGTGTTCTTCCTCTATTTGAGAAACAAACTTACAATGTGACAATCTCCCAAGACCACCAGGCAGATACCATAACTGACAAGCAGCCATCATTGCATAGTGCATCACAACCTAGAAATGTTGCTGATATTCCTCATCCAACAAGAAGGGATTATCTCTTTGCTGACCGTGAAAGTCAATTGGATTCATTACTCCCTTCCTCCACAATGTCACTATATGGGCAAGATTCCTCGCTTTCTGGTCTTCGTTCTTCTGCTCTTAGCCGTGCTGGTCCTTCTATTGTTACTACGTTAATACAAACAATGCAAATACCACTTTCCTATGCGGAGGACATCATTGGTATACAAGGAACTAATATTGATTACATTCGCCGTACTAGTGGAGGAATATTGACTGTGCAGGAAAGCAGGGTACCTGATGAAATCATTGTGGAAATAAAAGGCAACTCATCTCAAGTTCAAACGGCACAACAATTGATTCAGGAAACTATAAGCAATAACAGAGAACCTGTTGCTAGTGGTTACAGCAGATTAGATGCTGGTCTGAGGTCTTCTTACTCTCAATTAGGCAGTTCATCGTATTCTTCATCATCAGTGGCCTTGCAACCCTACAATGGGTATGGATCTTCTGGTCTAGGAGGATACAATAATTTCCGACTTTAA 1278 0.4484 MATVQSIQNANHPTDEPQSEPAPERRWPGWPGHCVFRLIVPVVKVGSIIGRKGELVKKTCEETRARIRVLDGADATSDRIVVISGKEELEADLSPAMVAVIRIFKRVSGLSETDGENLSGAAGIAFCSVRLLVASTQAINLIGKQGSLIKSIQEKSGASARILSGDEVPFYAAADERIVELQGEASKVLKALEAVVGHLRKFLVDQSVLPLFEKQTYNVTISQDHQADTITDKQPSLHSASQPRNVADIPHPTRRDYLFADRESQLDSLLPSSTMSLYGQDSSLSGLRSSALSRAGPSIVTTLIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGGILTVQESRVPDEIIVEIKGNSSQVQTAQQLIQETISNNREPVASGYSRLDAGLRSSYSQLGSSSYSSSSVALQPYNGYGSSGLGGYNNFRL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1097 425 Pfam KH domain 305 367 IPR004088 GO:0003723
Lal7g1097 425 Pfam KH domain 129 195 IPR004088 GO:0003723
Lal7g1097 425 Pfam KH domain 36 88 IPR004088 GO:0003723
Lal7g1097 425 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 125 208 IPR036612 GO:0003723
Lal7g1097 425 Gene3D K Homology domain, type 1 33 104 IPR036612 GO:0003723
Lal7g1097 425 Gene3D K Homology domain, type 1 127 202 IPR036612 GO:0003723
Lal7g1097 425 CDD KH-I 304 366 - -
Lal7g1097 425 Gene3D - 282 375 - -
Lal7g1097 425 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 21 413 - -
Lal7g1097 425 ProSiteProfiles Type-1 KH domain profile. 126 195 - -
Lal7g1097 425 SMART kh_6 301 370 IPR004087 GO:0003676
Lal7g1097 425 SMART kh_6 32 105 IPR004087 GO:0003676
Lal7g1097 425 SMART kh_6 125 200 IPR004087 GO:0003676
Lal7g1097 425 CDD PCBP_like_KH 35 104 - -
Lal7g1097 425 ProSiteProfiles Type-1 KH domain profile. 33 100 - -
Lal7g1097 425 MobiDBLite consensus disorder prediction 1 16 - -
Lal7g1097 425 MobiDBLite consensus disorder prediction 228 243 - -
Lal7g1097 425 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 21 413 - -
Lal7g1097 425 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 297 371 IPR036612 GO:0003723
Lal7g1097 425 MobiDBLite consensus disorder prediction 228 252 - -
Lal7g1097 425 MobiDBLite consensus disorder prediction 1 26 - -
Lal7g1097 425 CDD PCBP_like_KH 128 196 - -
Lal7g1097 425 ProSiteProfiles Type-1 KH domain profile. 302 365 - -
Lal7g1097 425 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 24 88 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1097 Lal-Chr7 16964622 16969884 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1097 K21444 - gmx:100807645 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1097 7 16964622 16969884 Lal7g1097 7 16964622 16969884 ECH
Lal7g1097 7 16964622 16969884 Lal21g1231 21 15355189 15361821 PCT
Lal21g1231 21 15355189 15361821 Lal7g1097 7 16964622 16969884 PCT