Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1231 ATGGCCACCCTCAACGGCGCCACCAACCCCGATCTTCCATCCGCCGCCACCACCTCCGATGATACTCTTATCCCCGAACCACCTTCTGCCACCACTCCGCCGGAAAAGAAATGGCCCGGTTGGCCTGGAGACTGTGTCTTCCGTCTCATCGTTCCCGTCGGTAAAGTCGGAAGCATCATCGGTCGTAAGGGAGAACTCGTTAAGAAGATTTGTGAAGAGACTCGAGCTCGTGTTCGCGTTCTTGATGGTGCTGCTGGTACTCCCGATCGAATTGTACTCATATCTGGGAAAGAAGAGCTAGATGCAGCTCTTTCCCCTGCAATGGATGCTGTAATGAGGATATTTAAACGTGTATCTGGATTATCCGAAAGTGATGACGATATTACAGAAGCTGCTGGGGCTGTGTTTTGTTCCATCCGTTTATTGGTCGCATCAACCCAGGCTATCAATTTGATTGGAAAGCAAGGATTGTCAATCAGATCTATACAGGAGAGTACCAGTGCTTCTGTTAGAGTATTATCTGGCGATGAGGTGCCATTTTATGCTGCTGCGGATGAGAGGATTGTGGAAGTGCAGGGAGAAGCCTTGAAGGTCCTTAAAGCTCTGGAATTAATAGTTGGCCATCTGAGGAAGTTTTTGGTTGATCATAGTGTTCTTCCTCTATTTGAACAGAAAACTTACAACGTGCCTACCACACAAGACCGTCGAACAGAGACCTGGCCTGACAAGTCAGTGCAGCACACTCCTTCACAAACTAGCATATTTGCTGATATGCCTCTTGCAACAAAAAGGGATTCTCTCTTTGTTGACCGTGAAAGTCAGTTGGATTCATTACTCCCTCCCTCCAACATGTCTCTCTATGGGCAAGATTCTTCGCTATCTAGCATTCGTTCTTCAACGCTTGGTCGTGTTGGTGCTCCTATTGTTACTACGGTAATACAAACAATGCAAGTACCACTGTCCTATGCGGAGGACATTATTGGTATTCAAGGGTCTAATATCGATTACATTCGCCGAACTAGTGGAGCCATATTGACTGTGCAGGAGAGCAGGTTGCCTGATGAAATTATTGTGGAAATAAAAGGCTCATCATCTCAGGTTCAAATGGCACAACAATTGATTCAGGAAGTTATAAACACTCACAATGAGCCTGTCACTAACAGTTACAGCAGGTTAGATGCAGGTCTGAGGTCTGCATACTCAACCGATGCAGCAGGTCTGAGATCTGCTTACTCAACTGATACAGCGGCTCTGAGGTCTGTATACTCAACCGATGCAGCAGCTCTAAGGTCTTCATACTCTCAATTGGGTAGTAGTGCATCACGCTCCTCGGCTTCATTGCCGTCACGTTCATACACAGGTTATGGAGGGTCTAGTTTAGGAGACTACAGTACTTTCAGACTTTAA 1407 0.4655 MATLNGATNPDLPSAATTSDDTLIPEPPSATTPPEKKWPGWPGDCVFRLIVPVGKVGSIIGRKGELVKKICEETRARVRVLDGAAGTPDRIVLISGKEELDAALSPAMDAVMRIFKRVSGLSESDDDITEAAGAVFCSIRLLVASTQAINLIGKQGLSIRSIQESTSASVRVLSGDEVPFYAAADERIVEVQGEALKVLKALELIVGHLRKFLVDHSVLPLFEQKTYNVPTTQDRRTETWPDKSVQHTPSQTSIFADMPLATKRDSLFVDRESQLDSLLPPSNMSLYGQDSSLSSIRSSTLGRVGAPIVTTVIQTMQVPLSYAEDIIGIQGSNIDYIRRTSGAILTVQESRLPDEIIVEIKGSSSQVQMAQQLIQEVINTHNEPVTNSYSRLDAGLRSAYSTDAAGLRSAYSTDTAALRSVYSTDAAALRSSYSQLGSSASRSSASLPSRSYTGYGGSSLGDYSTFRL 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1231 468 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 33 408 - -
Lal21g1231 468 Pfam KH domain 47 103 IPR004088 GO:0003723
Lal21g1231 468 Pfam KH domain 314 376 IPR004088 GO:0003723
Lal21g1231 468 Pfam KH domain 139 205 IPR004088 GO:0003723
Lal21g1231 468 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 33 408 - -
Lal21g1231 468 Gene3D K Homology domain, type 1 45 119 IPR036612 GO:0003723
Lal21g1231 468 Gene3D K Homology domain, type 1 137 212 IPR036612 GO:0003723
Lal21g1231 468 CDD PCBP_like_KH 138 206 - -
Lal21g1231 468 CDD KH-I 313 375 - -
Lal21g1231 468 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 136 216 IPR036612 GO:0003723
Lal21g1231 468 MobiDBLite consensus disorder prediction 1 26 - -
Lal21g1231 468 ProSiteProfiles Type-1 KH domain profile. 44 111 - -
Lal21g1231 468 MobiDBLite consensus disorder prediction 1 39 - -
Lal21g1231 468 CDD PCBP_like_KH 46 115 - -
Lal21g1231 468 ProSiteProfiles Type-1 KH domain profile. 136 205 - -
Lal21g1231 468 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 307 380 IPR036612 GO:0003723
Lal21g1231 468 SMART kh_6 43 116 IPR004087 GO:0003676
Lal21g1231 468 SMART kh_6 135 210 IPR004087 GO:0003676
Lal21g1231 468 SMART kh_6 310 379 IPR004087 GO:0003676
Lal21g1231 468 Gene3D K Homology domain, type 1 310 384 IPR036612 GO:0003723
Lal21g1231 468 ProSiteProfiles Type-1 KH domain profile. 311 374 - -
Lal21g1231 468 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 38 99 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1231 Lal-Chr21 15355189 15361821 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1231 K21444 - gmx:100815466 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1231 21 15355189 15361821 Lal21g1231 21 15355189 15361821 ECH
Lal7g1097 7 16964622 16969884 Lal21g1231 21 15355189 15361821 PCT
Lal21g1231 21 15355189 15361821 Lal7g1097 7 16964622 16969884 PCT