Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1083 AATTTTCCCCTACTATTTATCAACCACTACATGCAATCACTTCTTGAAATGGCAATAAGTAACATAGTTATTGGACTTTTTCTTATAACCTTTGTAGTGACAACCTCTGCTGGTAACTTTTACCAAGACTTTGATATAACATGGGGTGATGGTCGTGCCAAAATCCTTAACAATGGAGAGCTTGTTACCTTGTCTATGGACAAAGCCTCTGGCTCTGGATTTTGTTCCAAAAATGAATACTTGTTTGGAAAATTTGACATGCAACTAAAGCTTGTGGCTGGTAACTCTGCAGGCACGATTACAACCTATTATCTATCTTCTGTTGGGGATACTCGTGATGAAATAGACTTTGAATTTCTGGGTAACTTAAGTGGTGACCCTTATATTGTTCATACAAATGTATACACCAAAGGGAAAGCAAATAGAGAACAACAATTCTATTTGTGGTTCGACCCTACCAAAGACTTCCACACTTATTCCATACTTTGGAATCCTCAAAGCATCATATTCTATGTGGATGGAACACCCATAAGAGAGTTCAAGAACTTGGAATCAAAAGGGGTTCCTTTTCCAAAAAATCAAGCTATGAGGATAATCTCTACCCTTTGGGATGGTGAGAATTGGGCTACAAGGGGTGGCCTAGTGAAAACAGATTGGAGCCAAGCCCCTTTCACTGCTTCATTTAGCAACTACAATGCTCAAGCATGTGTTTGGAGTTCTTCTTCAGGCTCATCTTGCTCTTTCAATTCATCAGAAAATCAACCATGGTTGACACAAATAATTGATGCAGAAGGTGAAGCTAGAATTCAGTGGGTGCAAAAGAATTATATGGTTTACAATTATTGCACTGATGAGAACCGAATCCAACAAGGCCTCCCTCTTGAATGTTTACAACATTAA 900 0.3867 NFPLLFINHYMQSLLEMAISNIVIGLFLITFVVTTSAGNFYQDFDITWGDGRAKILNNGELVTLSMDKASGSGFCSKNEYLFGKFDMQLKLVAGNSAGTITTYYLSSVGDTRDEIDFEFLGNLSGDPYIVHTNVYTKGKANREQQFYLWFDPTKDFHTYSILWNPQSIIFYVDGTPIREFKNLESKGVPFPKNQAMRIISTLWDGENWATRGGLVKTDWSQAPFTASFSNYNAQACVWSSSSGSSCSFNSSENQPWLTQIIDAEGEARIQWVQKNYMVYNYCTDENRIQQGLPLECLQH 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1083 299 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 34 228 IPR000757 GO:0004553|GO:0005975
Lal7g1083 299 PRINTS Glycosyl hydrolase family 16 signature 72 90 IPR008264 GO:0004553|GO:0005975
Lal7g1083 299 PRINTS Glycosyl hydrolase family 16 signature 130 143 IPR008264 GO:0004553|GO:0005975
Lal7g1083 299 PRINTS Glycosyl hydrolase family 16 signature 148 165 IPR008264 GO:0004553|GO:0005975
Lal7g1083 299 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 23 297 IPR044791 GO:0004553
Lal7g1083 299 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 252 296 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lal7g1083 299 SUPERFAMILY Concanavalin A-like lectins/glucanases 40 297 IPR013320 -
Lal7g1083 299 Gene3D - 26 299 - -
Lal7g1083 299 CDD GH16_XET 35 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lal7g1083 299 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 23 297 - -
Lal7g1083 299 Pfam Glycosyl hydrolases family 16 41 220 IPR000757 GO:0004553|GO:0005975
Lal7g1083 299 PIRSF EndGlu_transf 6 299 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lal7g1083 299 ProSitePatterns Glycosyl hydrolases family 16 active sites. 114 124 IPR008263 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1083 Lal-Chr7 16836913 16838137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1083 17 297 Glycoside Hydrolase AT4G25810 66.078 2.70e-139 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1083 K14504 - gmx:100807063 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1083 7 16836913 16838137 Lal21g1213 21 15094207 15096947 PCT
Lal21g1213 21 15094207 15096947 Lal7g1083 7 16836913 16838137 PCT