Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1213 ATGACTAGTAAAACTCCTATAGGGTTTCTTCTCTTTGCAACCATGTTTTTGGTTGCTGCATCAGGTGGAAACTTTAACCAAGATTTTGACATAACATGGGGTGATGGTCGTGCCAAAATCCTTGGTAATGGACAACTTCTTACTTTGTCCCTAGACAAAATTTCTGGCTCTGGATTTCGTTCCAAAAATGAGTACTTGTTTGGAAAAATTGACATGCAGCTCAAGCTTGTTGCTGGTAACTCTGCTGGCACTGTCACAGCTTATTATCTATCTTCTCTGGGGTCTACTCATGATGAAATAGACTTTGAATTTCTGGGTAACTTAAGTGGTGATCCTTATATTCTTCATACAAATGTATTCACACAAGGGAAAGGAAACAGAGAGCAACAATTTTATCTGTGGTTTGACCCAACCAAGGACTTTCACACTTACTCTATTCTATGGAATCCTCATAGCATCATATTCTCAGTGGATGGAACACCAATAAGAGAGTTCAAGAATTTGGAGTCAAAAGGGGTTTCTTTTCCAAAAAACCAAGCCATGAGAATATACTCTAGCCTATGGAATGCAGATGATTGGGCCACAAGGGGTGGACTTGTGAAAACTGATTGGACCAAAGCACCATTCACTGCTTCATATAGAAATTTCAATGCACAAGCTTGTACTTGGACTTCTTCAGGTTCCTCTTGTTCTTCTAATAATTCTCCATCATGGTTTGGACAATCATTAGATTCTACAGGCCAAGAAAGAATTCAATGGGTGCAAAAGAACTACATGATTTATAACTATTGCACTGATACCAAACGTTTCTCACAAGGCTTCCCTCTAGAATGCACACTTGCATGA 846 0.3913 MTSKTPIGFLLFATMFLVAASGGNFNQDFDITWGDGRAKILGNGQLLTLSLDKISGSGFRSKNEYLFGKIDMQLKLVAGNSAGTVTAYYLSSLGSTHDEIDFEFLGNLSGDPYILHTNVFTQGKGNREQQFYLWFDPTKDFHTYSILWNPHSIIFSVDGTPIREFKNLESKGVSFPKNQAMRIYSSLWNADDWATRGGLVKTDWTKAPFTASYRNFNAQACTWTSSGSSCSSNNSPSWFGQSLDSTGQERIQWVQKNYMIYNYCTDTKRFSQGFPLECTLA 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1213 281 CDD GH16_XET 20 278 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lal21g1213 281 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 19 213 IPR000757 GO:0004553|GO:0005975
Lal21g1213 281 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 280 IPR013320 -
Lal21g1213 281 PRINTS Glycosyl hydrolase family 16 signature 57 75 IPR008264 GO:0004553|GO:0005975
Lal21g1213 281 PRINTS Glycosyl hydrolase family 16 signature 115 128 IPR008264 GO:0004553|GO:0005975
Lal21g1213 281 PRINTS Glycosyl hydrolase family 16 signature 133 150 IPR008264 GO:0004553|GO:0005975
Lal21g1213 281 Gene3D - 13 280 - -
Lal21g1213 281 ProSitePatterns Glycosyl hydrolases family 16 active sites. 99 109 IPR008263 GO:0004553|GO:0005975
Lal21g1213 281 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 9 280 IPR044791 GO:0004553
Lal21g1213 281 PIRSF EndGlu_transf 3 281 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lal21g1213 281 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 234 278 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lal21g1213 281 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9 280 - -
Lal21g1213 281 Pfam Glycosyl hydrolases family 16 26 206 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1213 Lal-Chr21 15094207 15096947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1213 1 281 Glycoside Hydrolase AT4G25810 72.281 3.57e-153 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1213 K14504 - gmx:100807063 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1083 7 16836913 16838137 Lal21g1213 21 15094207 15096947 PCT
Lal21g1213 21 15094207 15096947 Lal7g1083 7 16836913 16838137 PCT