Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0939 ATGGATTCTGATTCAATCACCACCACTCCCATTCCTTCTGCCACAAACGCTAAAAACCTGGGCAAGAAGAAAAAGATAAATTGGTCCGCTAAATTAAAGCAGAACAAGGTTGATGCGCGTCGTGAACAGTGGCTATCTCAAGGTACGGTGAAGAATATGGGGTGCAAGGATGGAGAGGATGATGACAGCCACGCGGCGCTACTGCGTGCTGGGAAGCACGGCAAACACTTGGTGGAGAAATTCGAGACGAAGCGGGGTAGAGGCCAGGAGGACAATGGAGGGATGATTCATCAAGACAGTTATTGGGACTCACTCAGTTATAGTTCGACAAGTAATGTTTTTGGGGTAAATTTCACTGGCAGTAGTAGCAGCAGAAGCAGTAGTTCTAGCAGTGCAGGTTGCTGCTCCGGTGATATTACAGAAGAAAATGACGAAGAAGAATGCTTGGATGATTGGGAGGCTGTGGCAGATGCTTTAGCAGCCAATGAAGATCAGCAGCAGCATCAAAACCCTTGTTCTGATTTGCCAATTTCACCTATTGTGCAAACGGGTTCGCATGATGGGTCGAATTCAGGGGCGATGAGTTCAAAACTAGAGAGTGCTAGACTGATTCCTTGGGCATCAGGAAATACCCGAGCTTGGAGGGCTGATGATGCCTTTCGCCCTCGGAGCTTGCCCAATTTGTCTAAGCAGCTCTGTATGCCGAACTCGAATCAGTATTATGGAGGAGGATCTCCCTGGACTCGCCCTACAATATCATCTTCATGTCCAATATGCTGTGAGGATCTTGATTTAACAGACTCGAGTTTTTTGCCTTGCCCGTGTGGGTTTCGGCTTTGTCTCTTTTGCCACAAGAGGATCCTTGAGGAGGATGGTCGCTGTCCTGGGTGTAGGAAGCCCTATGAGTGTGAGCCTGTTGAGACAGAGGCAAAGGTGACTGGTGGCAGCCTCACTTCTCGCTTGGTTCGTTCGTGTAGCTTGATCGAAAGGTCCTAA 996 0.4859 MDSDSITTTPIPSATNAKNLGKKKKINWSAKLKQNKVDARREQWLSQGTVKNMGCKDGEDDDSHAALLRAGKHGKHLVEKFETKRGRGQEDNGGMIHQDSYWDSLSYSSTSNVFGVNFTGSSSSRSSSSSSAGCCSGDITEENDEEECLDDWEAVADALAANEDQQQHQNPCSDLPISPIVQTGSHDGSNSGAMSSKLESARLIPWASGNTRAWRADDAFRPRSLPNLSKQLCMPNSNQYYGGGSPWTRPTISSSCPICCEDLDLTDSSFLPCPCGFRLCLFCHKRILEEDGRCPGCRKPYECEPVETEAKVTGGSLTSRLVRSCSLIERS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0939 331 Pfam RING/Ubox like zinc-binding domain 256 302 - -
Lal7g0939 331 ProSiteProfiles Zinc finger RING-type profile. 256 298 IPR001841 -
Lal7g0939 331 SUPERFAMILY RING/U-box 254 306 - -
Lal7g0939 331 CDD mRING-HC-C4C4_CNOT4 256 299 IPR039515 -
Lal7g0939 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 314 IPR013083 -
Lal7g0939 331 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 328 - -
Lal7g0939 331 MobiDBLite consensus disorder prediction 1 48 - -
Lal7g0939 331 MobiDBLite consensus disorder prediction 1 22 - -
Lal7g0939 331 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 13 328 IPR039780 GO:0004842|GO:0030014
Lal7g0939 331 MobiDBLite consensus disorder prediction 163 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0939 Lal-Chr7 15753446 15755273 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0939 - - ahf:112695276 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0939 7 15753446 15755273 Lal7g0939 7 15753446 15755273 ECH
Lal14g1544 14 16147825 16149524 Lal7g0939 7 15753446 15755273 LSH
Lal7g0939 7 15753446 15755273 Lal19g1099 19 14640198 14641796 LSH