Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1099 ATGGATTCTGATTCAATCACCACCACTACTCCCATTCCTTCTGCAACGGGTGCTAAGAGTCCGTGTAAGAAGAAAAAGCTCAACAGGTATGCCAAATTAAAGCAGAGTAAGATTGATGCGCGTCGTGAGCAGTGGCTATCTCAAGGTACGGTGAATAATAAGGGGTGCAAGGATGGGGTGGATGGTGATAGCCACCCGCCACCATTGCCGGCCGGGAAACACAACAAACATTTATTGAAGCAATTGGAGACAGAGCGGGGTAGAGAGATGATTTGTCAAGACAGCGATTTGGATTCACCATCCAACAGTCCCACTAGTGATGTTTCTGGGACAAATTTTACCGGGACTAGTAGCGGTGGTAACAGCAGAAGCAGTAGTTCTAGCAGTGCAGGGTGCTGCTCTGGGAATATCACAGAAAAAGAGGAAGAAGAAGAATGCTTGGATGATTGGGAGGCTGTTGCAGATGCTTTAGCGGCCAATGAAAATCATCAACATCAAAACCCTTGTTATGATTCACTCCCCCAACCTATTGTGCAAACGGTATTGCCTGATGGGTTGAATTTAGGAGCTACAAAACTGGAGTGTGCTGGATTGGTTCCTTTGGCATCCGACAATAACCGAGCTTGGAGGGCTGATGATGCTTTTCACCCTCAGACTTTGCCTAATTTGTCAAAACAGCTCAGTATGACGAACCCAGATCGATATTATGGAGGAGGGTCTCTTTGGAGTCACTCTACAATGCCGTCTTCATGTCCAATATGCTGTGAGGATCTTGATTTGACAGACTCGAGTTTTTTGCCTTGCCTGTGTGGGTTTCGGCTTTGTCTCTTTTGCCACAAGAGGATTCTTGAGGAGGATGGTCGCTGTCCTGGGTGTAGGAAGCCCTATGAGTGTGAACTTGCTGAGATGGAGACAAAAGTGATTGGGGGCAGCCTCACTCTTCGCTTGGCTCGTTTGTGTGCTTGA 966 0.4731 MDSDSITTTTPIPSATGAKSPCKKKKLNRYAKLKQSKIDARREQWLSQGTVNNKGCKDGVDGDSHPPPLPAGKHNKHLLKQLETERGREMICQDSDLDSPSNSPTSDVSGTNFTGTSSGGNSRSSSSSSAGCCSGNITEKEEEEECLDDWEAVADALAANENHQHQNPCYDSLPQPIVQTVLPDGLNLGATKLECAGLVPLASDNNRAWRADDAFHPQTLPNLSKQLSMTNPDRYYGGGSLWSHSTMPSSCPICCEDLDLTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYECELAEMETKVIGGSLTLRLARLCA 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1099 321 Coils Coil 23 43 - -
Lal19g1099 321 Pfam RING/Ubox like zinc-binding domain 251 297 - -
Lal19g1099 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 307 IPR013083 -
Lal19g1099 321 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 13 320 IPR039780 GO:0004842|GO:0030014
Lal19g1099 321 MobiDBLite consensus disorder prediction 1 74 - -
Lal19g1099 321 MobiDBLite consensus disorder prediction 95 135 - -
Lal19g1099 321 SUPERFAMILY RING/U-box 249 298 - -
Lal19g1099 321 MobiDBLite consensus disorder prediction 1 16 - -
Lal19g1099 321 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 320 - -
Lal19g1099 321 CDD mRING-HC-C4C4_CNOT4 251 294 IPR039515 -
Lal19g1099 321 MobiDBLite consensus disorder prediction 93 135 - -
Lal19g1099 321 ProSiteProfiles Zinc finger RING-type profile. 251 293 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1099 Lal-Chr19 14640198 14641796 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1099 - - gmx:100792365 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1099 19 14640198 14641796 Lal19g1099 19 14640198 14641796 ECH
Lal14g1544 14 16147825 16149524 Lal19g1099 19 14640198 14641796 LSH
Lal7g0939 7 15753446 15755273 Lal19g1099 19 14640198 14641796 LSH