Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0881 ATGAATAATAATCTAGCAAAGAGTGCTGCTGCAGCGGCACCACCACCGTCGTTTTTCGGCAATTCCGGAGCAACAACAACGGCAGTGCACACCACCTCCGTCATAAACCATCCATCACCCCATCTTCTCTCTCAGTCACAGTCTCAAACACAAGGTGCTCCACACTTCCATGGCCACTTTCAGCTTTCACAACCCCAAACCCATTTACTTGCACAATCATCACAATTTGCACCCTCTCATACTCAAGTGCAATCACAGCACCCTCAACCTCCAACTCAGTCAGTTAACCATGGTAATGCCAACAATACTAATGTGCCTGCTGCTGCTCCGGCCACTGCTTCTGTGAAGCGCTCAGCTCAAAAGCCGCCTTCGCGGCTCTCTGGGTCGTCTAATGCTAACCAGGCTTCGCCATTTAAGACTATGGAATTGACCCCGGCTCCCCCACGGAAAAAGAGGAGTTTACCGGAGAAGCAAATACCAGAGAAGGTGGCTGCAATTTTGCCGGAGTCTGCTCTTTATAGTCAGTTGCTTGAACTCGAGGCCCAGGTGGATGCTACTTTGGCGAGGAAAAAGAATGACATACAGGAGGCTGTTAGAAACCCTCCATGTGCTCGGAAAACTCTGAGGATTTATGTGTATAATACGTTTTCAAATCAGACAAATTTGGATTCTGAGAAGAAAGTTGGAATGGAGCCTTCTTGGTCTCTCAAGATAACCGGAAGGATATTGGAAGATGGTAAGGATCCTGTGGCAGTTGGGATTTCGCAGAGATCAAATCCTTCATACCCCAAGTTTTCAGCCTTTTTCAAGAAAATCGTGATATACTTGGATCAGGGATTCTATCCTGATAATCACGCAATTGTATGGGATAGTGCTCGTTCACCAGCCGAACAGGATGGTTTTGAGGTAAAGAGGAAAGGAGACAAAGAATTCACTGCAGTGATCAGAATGACGATGAATCATACACCTGAGAAGTTTATGGTTTCGTCACAACTTTCTAAAGTTTTAGGGATTGAGTTCGACACTCGGGCAAGAATAATAGCTGCACTTTGGCACTATGTGAAGTCCAGGAAGCTACAGAGCCCAAATGACCCTTCATTCTTCATGTGTGATGCTTCTCTCCAAAGGGTGTTTGGAGAAGAGAAAATGAAATTCTCCATGGCTGCTCAGAAGATATCGCAGCATTTATCCCAACCACAGCCTTTACACCTGGAGCATAAAATCAAGCTTTCTGGACATTGTCCAGTTGGAACTTCATGTTACGATGTGCAGGTTGACGTACCTCTTTCAGTTGAGAAGGATATGTCTGCATTCTTGGCAAGCATCGAGAGTCACAAAGAGATTGATGCTTTTGACGAATTGATACACACTTCCATAAAAAAGATCCACGAGCATCGTAGGAGACGAGCTTTCTTTCTTGGCTTTAGTCAGTCCCCAGCAGAGTTCATTAATGCTTTGATCGCATCTCAGAGCAGAGATCTAAAGCTTGTTGCTGGAGATGCCAGTCATATTGCTGAAAAGGAACAGCAATCTGAATTCTACAATCAACAATGGGTTGAGGATGCTGTCATTCGCTACCTGAACCGGAAAACTGGACGAAGTGATGCTTCTGAAGCACCTAACAGAAAATTGTAA 1635 0.452 MNNNLAKSAAAAAPPPSFFGNSGATTTAVHTTSVINHPSPHLLSQSQSQTQGAPHFHGHFQLSQPQTHLLAQSSQFAPSHTQVQSQHPQPPTQSVNHGNANNTNVPAAAPATASVKRSAQKPPSRLSGSSNANQASPFKTMELTPAPPRKKRSLPEKQIPEKVAAILPESALYSQLLELEAQVDATLARKKNDIQEAVRNPPCARKTLRIYVYNTFSNQTNLDSEKKVGMEPSWSLKITGRILEDGKDPVAVGISQRSNPSYPKFSAFFKKIVIYLDQGFYPDNHAIVWDSARSPAEQDGFEVKRKGDKEFTAVIRMTMNHTPEKFMVSSQLSKVLGIEFDTRARIIAALWHYVKSRKLQSPNDPSFFMCDASLQRVFGEEKMKFSMAAQKISQHLSQPQPLHLEHKIKLSGHCPVGTSCYDVQVDVPLSVEKDMSAFLASIESHKEIDAFDELIHTSIKKIHEHRRRRAFFLGFSQSPAEFINALIASQSRDLKLVAGDASHIAEKEQQSEFYNQQWVEDAVIRYLNRKTGRSDASEAPNRKL 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0881 544 CDD SWIB_like 328 396 - -
Lal7g0881 544 SUPERFAMILY SWIB/MDM2 domain 316 406 IPR036885 -
Lal7g0881 544 SMART swib_2 322 401 IPR019835 -
Lal7g0881 544 MobiDBLite consensus disorder prediction 73 109 - -
Lal7g0881 544 Pfam SWIB/MDM2 domain 325 396 IPR003121 -
Lal7g0881 544 MobiDBLite consensus disorder prediction 117 140 - -
Lal7g0881 544 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 98 537 - -
Lal7g0881 544 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 98 537 - -
Lal7g0881 544 MobiDBLite consensus disorder prediction 73 156 - -
Lal7g0881 544 ProSiteProfiles SWIB/MDM2 domain profile. 321 398 IPR003121 -
Lal7g0881 544 MobiDBLite consensus disorder prediction 36 59 - -
Lal7g0881 544 Gene3D SWIB/MDM2 domain 317 403 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0881 Lal-Chr7 15339582 15343213 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lal7g0881 SWIB 3.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0881 K11650 - gmx:100817271 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0881 7 15339582 15343213 Lal7g0881 7 15339582 15343213 ECH
Lal7g0881 7 15339582 15343213 Lal4g0725 4 5997095 6001285 PCT
Lal4g0725 4 5997095 6001285 Lal7g0881 7 15339582 15343213 PCT