Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0725 ATGAACATGAACCAGAGGAACCACCCAACCAATCTTCACCCACAACCAAATCCTCAAACCCCAAGTGGTGCATCTCACTTTCTTAGTCACTTACCAAATCCTCAAACCCCAAGTGGTGCATCTCACTTTCTTAGTCACTTACCAAATCCTCAAACCCCAAGTGGTGCATCTCACTTTCCTAGTCACTTACCAAATCCTCAAACCCCAAGTGGTGCATCTCATTTCCCTAGTCATTTTCAGTTGCTTCTTGCACAAACCCAGTATGCACATGCACTTGCTCAAGCACAGATCCATGCCCAATTGCAGCCTCAGTCACAAGCTCATGCCACATTGCAGTCTCAGGCTTCACATCCTCTCTTACAATCTCAAACTCGCCCTTTTATAGCCAACTTTCATAACAACACAAATACTAATGTTGGCAATGTTGCTAACACTATGGCTGCAACCGGAAGCGCAAATTGGATGAATCAAAGGCCTATTCGGCCAAAGATGAAGGAGTTACCAGAGAAACAAAAGGTTGAAAAGGTGTCTACACTTCTACCGGAGTCTCCTTTGTATACCCAGTTGCTTGATTTTGAGAATCAGGTGGATGCTGAAATGGCCCGATATAGATTTGAATTACAAGAGGCTTTCAAAAGGCCTTCTTATGTTCAGAAAACTCTTCGTGTTTATGTATTTAATACATTCTCAAATCAGAATATATTTCTCAACAAAAATGGTGAGGAAGCTTCTTGGTCACTCAAGATAGTTGGAAGAATATTGGAAGATGATAAGGGTTCTTTTGAAGCTGGAACTTCACAAGGAACAAAAAGTCCTTCATGCCCAAAATTTTCCTCATTTTTCAAGAAAATTGTTGTACACTTGGACGAGAACCTTTATTCTGATGATCATGTGATTACATGGGACAATGCTCGCTCACCAATTGAACAAGATGGTTTTGAGGTGAAGAGAAAAGGTGACAAAGAATTCACTACAAGGATCACAATGGAATTGAAGAATGTACCTGAGAAGTTTATGCTTTCACCACAAATGTCTAAGCTTTTAGGGTTTCAGGTTGAGACTCGTCCTAGAATAATAGCTGCCCTTTGGCACTATATCAATTCTAGGAAGCTAGAAATCTCAAATGACCCTTTCTCCTTCATTTGTGACCCTTCTCTCCAAATGGTTTTTGGGGCAAATAAGATGGAATTTCAAGAAGCTATTAAGAAGTTACCACAACATTTGTCACTCCCACAACCTATTACTTTGGAGCACCAAATCAAGCTTTCTGGAAATCCTACTGCTGAAACTGGGTGTTATGATATACAAGTTTATGTCCATCCTCCATTGGACAATGATATTTCTTCAATCTTGGCAGGTCGTGAGAGTCAAAAGCAAATTGAATTTTTTGATGATGTAATTAGCTCTTACCTTAAGAAGGTTCATGAACATCAAAGAAGAAGGGCATTCTTTCATAGCTTTAGTAACTCTCCTGAAGATTTCATCAATGCTTTGATCGCTTCTCAGAGCAAGGATATGAAACTTGTTGGTGGAGATGCTAGTGATAATGCTCAAATGAAACGACGTTCCAAATTCTTCAATCAACCATGGGTTAAGGATGCTTCCATCCGATACTTGAACCGCAAACATGCTGGAAATGATGCACCTGGAGGCTCCTAA 1659 0.4027 MNMNQRNHPTNLHPQPNPQTPSGASHFLSHLPNPQTPSGASHFLSHLPNPQTPSGASHFPSHLPNPQTPSGASHFPSHFQLLLAQTQYAHALAQAQIHAQLQPQSQAHATLQSQASHPLLQSQTRPFIANFHNNTNTNVGNVANTMAATGSANWMNQRPIRPKMKELPEKQKVEKVSTLLPESPLYTQLLDFENQVDAEMARYRFELQEAFKRPSYVQKTLRVYVFNTFSNQNIFLNKNGEEASWSLKIVGRILEDDKGSFEAGTSQGTKSPSCPKFSSFFKKIVVHLDENLYSDDHVITWDNARSPIEQDGFEVKRKGDKEFTTRITMELKNVPEKFMLSPQMSKLLGFQVETRPRIIAALWHYINSRKLEISNDPFSFICDPSLQMVFGANKMEFQEAIKKLPQHLSLPQPITLEHQIKLSGNPTAETGCYDIQVYVHPPLDNDISSILAGRESQKQIEFFDDVISSYLKKVHEHQRRRAFFHSFSNSPEDFINALIASQSKDMKLVGGDASDNAQMKRRSKFFNQPWVKDASIRYLNRKHAGNDAPGGS 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0725 552 CDD SWIB_like 340 408 - -
Lal4g0725 552 SUPERFAMILY SWIB/MDM2 domain 328 418 IPR036885 -
Lal4g0725 552 Pfam SWIB/MDM2 domain 337 408 IPR003121 -
Lal4g0725 552 Gene3D SWIB/MDM2 domain 329 415 IPR036885 -
Lal4g0725 552 SMART swib_2 334 413 IPR019835 -
Lal4g0725 552 MobiDBLite consensus disorder prediction 1 75 - -
Lal4g0725 552 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 114 550 - -
Lal4g0725 552 ProSiteProfiles SWIB/MDM2 domain profile. 333 410 IPR003121 -
Lal4g0725 552 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 114 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0725 Lal-Chr4 5997095 6001285 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lal4g0725 SWIB 5.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0725 K11650 - zju:107418039 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0725 4 5997095 6001285 Lal4g0725 4 5997095 6001285 ECH
Lal7g0881 7 15339582 15343213 Lal4g0725 4 5997095 6001285 PCT
Lal4g0725 4 5997095 6001285 Lal7g0881 7 15339582 15343213 PCT