Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0879 ATGGCAATGGCAACAATGAGAAAGATAATTCCAAGGAGCCCAGAAGCGAAGATTGGTATGCGAGTGAGTGATTTGTGGGATGTTCAGGAACCACAGCTAAGTCCTACTGAGAAGCTTAATGCTTGTTTTGAAAGCATCCCTGTCTCTGCGTTTCCTTTAGCTCCTTCAAACCAAGAAATTGAGATAAAATCAGACGCCACCCTAGCTGAGGCTGTTAAAATACTGGCATATCACAACGTTCTCAGCGCACCTGTGGTGAATGTTGATGCACCTGAAGATGCTAGTTGGATTGACAGATATATCGGGATAGTCGAGTTTGCTGGAATTGTTGTATGGATTCTGCATCAGTCTGAACCTTCAACTCCTAAGAGTCCATCAACTCCATCAAGTGCAAGTGCTATTGCAGCTGCAGCTAATGGAATAACCTTTGCTCTAGAGCTAGAAGCCTTAGGCCTTGGATCTGCTGCAACAACTTCAGGGGACTTCTTTGAGGATCTCACTTCTTCTGAGCTTTATAAGAATACCAAGGTTCGTGATATTTCAGGGACGTTCCGCTGGGCGCCATTCCTTGCTTTAGAGAGATCAAACTCATTTCTAACCATGCTCTTGCTGCTTTCTAAGTACAAGATGAAGGGTGTTCCTGTGGTAGATTTAGGTGCTGGTACAATTGATAACATCATTACACAGTCTGCTGTGATTCATATGTTGGCTGAATGTGCTGGCCTTCAGTGGTTTGAAAGTTGGGGAACAAAGGAACTATCTGAACTTGGTCTTCCCCTGGTGCCACCATATCATATCATCAAGGTTTGTGAGGATGAACCAGTCCTTCAAGCATTTAAACTGATGAGGAAAAAGAGAGTTGGAGGGGTACCTGTAATCGAGAGAGGTGGCAGCAAGCCAGTTGGTAATATAAGCTTGCGAGATGTTCAATTCTTGCTAACTGCTCCAGAAATCTACCATGATTATAGAACTATTAAAGTGAAGGACTTCCTCTCAGCAGTTAGAAGCTACTTAGAGAAGAATCAGAAAGCCTTCCCAAAGTTAACCGAATATATAACATGCAAAAAAGACTGCACTGTCAAAGAATTGATTCAATTATTTGACTATGAGAAGATTAATAGGGTTTATGTTGTGGATGATGATGGGAATCTGCAAGGACTGATCACACTAAGAGATATCATCTCAAGGCTAGTACACGAGCCCCGTGGCTATTTTGGCGATTTCTTCGATGGTGTTCTCCCGCTGCCTGCAAACTGCAGGGTTTAA 1266 0.4305 MAMATMRKIIPRSPEAKIGMRVSDLWDVQEPQLSPTEKLNACFESIPVSAFPLAPSNQEIEIKSDATLAEAVKILAYHNVLSAPVVNVDAPEDASWIDRYIGIVEFAGIVVWILHQSEPSTPKSPSTPSSASAIAAAANGITFALELEALGLGSAATTSGDFFEDLTSSELYKNTKVRDISGTFRWAPFLALERSNSFLTMLLLLSKYKMKGVPVVDLGAGTIDNIITQSAVIHMLAECAGLQWFESWGTKELSELGLPLVPPYHIIKVCEDEPVLQAFKLMRKKRVGGVPVIERGGSKPVGNISLRDVQFLLTAPEIYHDYRTIKVKDFLSAVRSYLEKNQKAFPKLTEYITCKKDCTVKELIQLFDYEKINRVYVVDDDGNLQGLITLRDIISRLVHEPRGYFGDFFDGVLPLPANCRV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0879 421 ProSiteProfiles CBS domain profile. 260 322 IPR000644 -
Lal7g0879 421 Pfam CBS domain 349 398 IPR000644 -
Lal7g0879 421 Pfam CBS domain 266 309 IPR000644 -
Lal7g0879 421 CDD CBS_pair_SF 202 309 - -
Lal7g0879 421 Gene3D - 49 243 IPR046342 -
Lal7g0879 421 SUPERFAMILY CBS-domain pair 264 407 IPR046342 -
Lal7g0879 421 CDD CBS_pair_SF 265 394 - -
Lal7g0879 421 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 8 421 - -
Lal7g0879 421 Gene3D - 250 400 IPR046342 -
Lal7g0879 421 CDD CBS_pair_SF 62 118 - -
Lal7g0879 421 ProSiteProfiles CBS domain profile. 347 405 IPR000644 -
Lal7g0879 421 ProSiteProfiles CBS domain profile. 55 120 IPR000644 -
Lal7g0879 421 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1-RELATED 8 421 - -
Lal7g0879 421 SMART cbs_1 188 237 IPR000644 -
Lal7g0879 421 SMART cbs_1 265 314 IPR000644 -
Lal7g0879 421 SMART cbs_1 350 398 IPR000644 -
Lal7g0879 421 SMART cbs_1 58 114 IPR000644 -
Lal7g0879 421 SUPERFAMILY CBS-domain pair 31 237 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0879 Lal-Chr7 15329174 15332675 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0879 - - gmx:100818156 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0879 7 15329174 15332675 Lal7g0879 7 15329174 15332675 ECH
Lal7g0879 7 15329174 15332675 Lal17g0853 17 6455377 6459177 PCT
Lal17g0853 17 6455377 6459177 Lal7g0879 7 15329174 15332675 PCT