Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0853 ATGTCCTTGGAATGCAAAAAGAAAACAGTGATGAGAAGAAGAATGGAAGAGAGTCCACGGAGTCCAGAGGCTAAGATAGGGATGAGAGTAGAGGATCTATGGGATATTCAAGAGCCAGAATTAAGTCCTAATGACAAACTCAATGCTTGTTTTGAAAGCATCCCTGTCTCTGCCTTCCCTCTTCCTCCTTCTAACCAAGAAATCGAGATAAAATCGGATGCCACCCTTGCCGAGGCTGTTAAAATACTGGCAAAGCATAACATTCTCAGTGCACCTGTGGTGGATGTGGATGCACCTGAAGATGCTAGTTGGATTGACAGATATATAGGAATAGTTGAGTTTGCCGGAATTGTTGTATGGATTCTGCATCAGTCCGAACCTACATCTCCGAAGAGTCCATCCAGTGGAACTGCTTTTGCAGCTGCGGCTAATGGAATGACTTCTGCGTTAGAACTAGACGCCTTAAACCTTGGATCTGCTCCAACAGCTTCAGGGAACTTTTTTGAGGATCTGATTTCTTCCGACCTTTATAAGAATACCAAGGTTCGTGATATTTCAGGGTCATTCCGCTGGGCTCCCTTTCTCGCTTTAGAAAGATCAAACTCATTTTTGACCATGCTGTTGCTGCTTTCGAAGTACAAGATGAAGAGTGTTCCTGTTGTGGACTTGGGTGCAGGTAGAATTGATAACATTATTACACAGTCTGCTGTAATTCACATGTTGGCAGAATGTTCTGGTCTTCAGTGGTTTGAGAGTTGGGGAGACAAGAAACTATCCGAAGTTGGTCTTCCCCTGGTCACACCAAGTCAAATCATCAAGGTTTATGAGGATGAACCAGTGCTTCAAGCATTTAAACTGATGAGGAAACAAGGGATTGGTGGGTTGCCTGTGATCAAAAGGGGTGGCAGCAAGGCAGTGGGTAACATGAGTCTGCAAGATGTTCAGTTCTTGCTAACAGCTCCTGAAATCTACCGTGATTACAGAGCTATTACAGTAAAAGACTTCCTCACGGTCGTTCCAACGACAAGTGACTTGATTACATGCAAAAAGGATTTCACAGTCAAAGAATTGATTCAATTGCTCGACCACAAGAAGATTCTTCGGGTCTACGTTGTGGACGACGACGGGAATCTGGAAGGATTGATCACACTTAGAGATATCATCTCAAGGCTAGTACATGAACCCCATGGCTATTTCGGGGATTTCTTTGACGGCGTTCTCCCCCTGCCTCCAAACAGCCGGGTTTAA 1248 0.4447 MSLECKKKTVMRRRMEESPRSPEAKIGMRVEDLWDIQEPELSPNDKLNACFESIPVSAFPLPPSNQEIEIKSDATLAEAVKILAKHNILSAPVVDVDAPEDASWIDRYIGIVEFAGIVVWILHQSEPTSPKSPSSGTAFAAAANGMTSALELDALNLGSAPTASGNFFEDLISSDLYKNTKVRDISGSFRWAPFLALERSNSFLTMLLLLSKYKMKSVPVVDLGAGRIDNIITQSAVIHMLAECSGLQWFESWGDKKLSEVGLPLVTPSQIIKVYEDEPVLQAFKLMRKQGIGGLPVIKRGGSKAVGNMSLQDVQFLLTAPEIYRDYRAITVKDFLTVVPTTSDLITCKKDFTVKELIQLLDHKKILRVYVVDDDGNLEGLITLRDIISRLVHEPHGYFGDFFDGVLPLPPNSRV 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0853 415 Gene3D - 49 247 IPR046342 -
Lal17g0853 415 CDD CBS_pair_SF 70 129 - -
Lal17g0853 415 ProSiteProfiles CBS domain profile. 340 399 IPR000644 -
Lal17g0853 415 Gene3D - 255 394 IPR046342 -
Lal17g0853 415 SUPERFAMILY CBS-domain pair 253 401 IPR046342 -
Lal17g0853 415 ProSiteProfiles CBS domain profile. 266 327 IPR000644 -
Lal17g0853 415 CDD CBS_pair_SF 269 388 - -
Lal17g0853 415 SUPERFAMILY CBS-domain pair 43 242 IPR046342 -
Lal17g0853 415 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1-RELATED 16 415 - -
Lal17g0853 415 Pfam CBS domain 341 392 IPR000644 -
Lal17g0853 415 Pfam CBS domain 270 314 IPR000644 -
Lal17g0853 415 Pfam CBS domain 68 113 IPR000644 -
Lal17g0853 415 ProSiteProfiles CBS domain profile. 63 128 IPR000644 -
Lal17g0853 415 MobiDBLite consensus disorder prediction 1 21 - -
Lal17g0853 415 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 16 415 - -
Lal17g0853 415 SMART cbs_1 270 319 IPR000644 -
Lal17g0853 415 SMART cbs_1 66 122 IPR000644 -
Lal17g0853 415 SMART cbs_1 344 392 IPR000644 -
Lal17g0853 415 SMART cbs_1 193 242 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0853 Lal-Chr17 6455377 6459177 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0853 - - gmx:100776754 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0853 17 6455377 6459177 Lal17g0853 17 6455377 6459177 ECH
Lal7g0879 7 15329174 15332675 Lal17g0853 17 6455377 6459177 PCT
Lal17g0853 17 6455377 6459177 Lal7g0879 7 15329174 15332675 PCT