Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0047 ATGAATACTGAGTATGATTATCTGTTCAAGCTCCTTCTTATTGGAGACTCTGGTGTTGGCAAATCATGTCTTCTTCTGAGGTTTGCTGATGATTCATACATTGACAGCTACATAAGCACCATTGGAGTTGATTTTAAAATACGAACTGTTGAGCAGGACGGGAAGACAATTAAACTACAGATTTGGGATACTGCCGGGCAAGAAAGATTTAGAACAATAACCAGTAGCTACTATCGTGGGGCACATGGGATCATTATTGTTTATGATGTCACGGATGAAGAGAGTTTCAATAATGTGAAGCAGTGGCTCAGTGAAATCGACCGCTACGCCAATGATAGTGTTAACAAGCTTCTGGTTGGAAACAAGAATGATCTGACAGCAAATAGAGTTGTCTCATATGATACCGCTAAAGAATTTGCCGACGAAATCGGCATACCTTTTATGGAAACAAGTGCGAAAGATTCTACAAATGTGGAACAGGCATTCATGGCCATGTCTGCTTCTATCAAAAATAGAATGGCAAGCAACCCAGCTGCAAATAATGCAAGGCCACCAACAGTGCAAATAAAAGGACAGCCAATTGGGCAGAAAAGTGGGTGTTGCTCTTCCTAA 612 0.4101 MNTEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYANDSVNKLLVGNKNDLTANRVVSYDTAKEFADEIGIPFMETSAKDSTNVEQAFMAMSASIKNRMASNPAANNARPPTVQIKGQPIGQKSGCCSS 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0047 203 ProSiteProfiles small GTPase Arf family profile. 2 178 - -
Lal7g0047 203 TIGRFAM small_GTP: small GTP-binding protein domain 7 164 IPR005225 GO:0005525
Lal7g0047 203 SMART arf_sub_2 1 173 - -
Lal7g0047 203 ProSiteProfiles small GTPase Rho family profile. 2 174 - -
Lal7g0047 203 ProSiteProfiles small GTPase Ras family profile. 1 203 IPR001806 GO:0003924|GO:0005525
Lal7g0047 203 SMART rho_sub_3 11 171 IPR001806 GO:0003924|GO:0005525
Lal7g0047 203 SMART ran_sub_2 14 201 - -
Lal7g0047 203 Pfam Ras family 10 169 IPR001806 GO:0003924|GO:0005525
Lal7g0047 203 ProSiteProfiles small GTPase Rab1 family profile. 4 202 - -
Lal7g0047 203 MobiDBLite consensus disorder prediction 176 203 - -
Lal7g0047 203 PRINTS Transforming protein P21 ras signature 9 30 - -
Lal7g0047 203 PRINTS Transforming protein P21 ras signature 32 48 - -
Lal7g0047 203 PRINTS Transforming protein P21 ras signature 50 72 - -
Lal7g0047 203 PRINTS Transforming protein P21 ras signature 112 125 - -
Lal7g0047 203 PRINTS Transforming protein P21 ras signature 147 169 - -
Lal7g0047 203 PANTHER RAS-RELATED PROTEIN RABD2A-LIKE 5 202 - -
Lal7g0047 203 CDD Rab1_Ypt1 7 172 - -
Lal7g0047 203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 186 IPR027417 -
Lal7g0047 203 PANTHER LD21953P-RELATED 5 202 - -
Lal7g0047 203 SMART ras_sub_4 6 172 - -
Lal7g0047 203 Gene3D - 1 201 IPR027417 -
Lal7g0047 203 SMART rab_sub_5 9 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0047 Lal-Chr7 420034 423651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0047 8 125 EF-hand Containing Proteins AT3G63150 26.829 7.59e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0047 K07874 - gmx:100306147 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0047 7 420034 423651 Lal7g0047 7 420034 423651 ECH
Lal7g0047 7 420034 423651 Lal2g1656 2 18929845 18934205 PCT