Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g1656 ATGAATACCGATGACTATTTGTTCAAGCTCCTTCTTATTGGAGACTCTGGTGTTGGTAAATCATGTCTTCTTCTGAGATTTGCTGATGATTCATATATCGAGAGCTACATAAGCACCATTGGAGTTGATTTTAAAATACGTACTGTTGAGCAGGATGGGAAGACCATTAAACTCCAGATCTGGGACACTGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTATCGCGGGGCCCATGGGATCATTATTGTTTATGATGTGACAGACGAAGAGAGCTTCAATAATGTGAAGCAGTGGCTCAGTGAAATTGACCGCTATGCCAATGATAGTGTTAACAAACTTTTGGTCGGAAACAAGTGTGATCTGACAGAAAACAGAGCTGTGTCATATGAAACTGCTAAAGCATTCGCGGATGAAATAGGAATACCTTTTCTGGAAACAAGTGCAAAAGATGCCACAAATGTCGAACAGGCATTCATGGCTATGACCGCTTCCATCAAGACCAGAATGGCAAGCCAACCTGCAAATAATGCAAGGGCTCCAACAGTGCAGATTAGAGGACAACCAGTTGCAAAGAACAGTGGTTGCTGCTCCTCTTAA 606 0.429 MNTDDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYANDSVNKLLVGNKCDLTENRAVSYETAKAFADEIGIPFLETSAKDATNVEQAFMAMTASIKTRMASQPANNARAPTVQIRGQPVAKNSGCCSS 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g1656 201 PRINTS Transforming protein P21 ras signature 8 29 - -
Lal2g1656 201 PRINTS Transforming protein P21 ras signature 31 47 - -
Lal2g1656 201 PRINTS Transforming protein P21 ras signature 49 71 - -
Lal2g1656 201 PRINTS Transforming protein P21 ras signature 111 124 - -
Lal2g1656 201 PRINTS Transforming protein P21 ras signature 146 168 - -
Lal2g1656 201 Pfam Ras family 9 169 IPR001806 GO:0003924|GO:0005525
Lal2g1656 201 ProSiteProfiles small GTPase Ras family profile. 1 201 IPR001806 GO:0003924|GO:0005525
Lal2g1656 201 SMART ras_sub_4 5 171 - -
Lal2g1656 201 SMART arf_sub_2 2 176 - -
Lal2g1656 201 SMART rab_sub_5 8 171 - -
Lal2g1656 201 Gene3D - 1 195 IPR027417 -
Lal2g1656 201 PANTHER LD21953P-RELATED 3 200 - -
Lal2g1656 201 PANTHER RAS-RELATED PROTEIN RABD2A-LIKE 3 200 - -
Lal2g1656 201 SMART rho_sub_3 10 170 IPR001806 GO:0003924|GO:0005525
Lal2g1656 201 SMART ran_sub_2 13 198 - -
Lal2g1656 201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 176 IPR027417 -
Lal2g1656 201 ProSiteProfiles small GTPase Arf family profile. 1 168 - -
Lal2g1656 201 CDD Rab1_Ypt1 6 171 - -
Lal2g1656 201 ProSiteProfiles small GTPase Rho family profile. 1 173 - -
Lal2g1656 201 ProSiteProfiles small GTPase Rab1 family profile. 3 201 - -
Lal2g1656 201 TIGRFAM small_GTP: small GTP-binding protein domain 6 163 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g1656 Lal-Chr2 18929845 18934205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal2g1656 9 133 EF-hand Containing Proteins AT5G27540 25.984 2.23e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g1656 K07874 - gmx:100813403 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g1656 2 18929845 18934205 Lal2g1656 2 18929845 18934205 ECH
Lal7g0047 7 420034 423651 Lal2g1656 2 18929845 18934205 PCT