Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0970 ATGTCTTCACCAAGCAAGCGGCGAGAGATGGACTTGATGAAACTGATGATGAGTGACTATAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTCCATTTTCATGGACCCAATGAGAGTCCTTATCAAGGAGGTGTGTGGAAAGTGAGAGTTGAGCTGCCAGATGCTTATCCTTATAAGTCTCCTTCCATTGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTTTGGATGTTATCAATCAAACCTGGAGCCCCATGTTTGATCTTGTCAATGTGTTTGAGGTATTTCTACCACAACTTCTTCTGTATCCAAATGCATCAGACCCCCTGAATGGAGAAGCTGCAGCTTTAATGATGCGTGACAAAGCTGCTTATGAACTAAGGGTTAAGGAGTACTGTGAGAAGTATGCTAAGCCTGAAGACATCGGAGCTATGCCCGAAGAGAAATCGAGCGATGAAGAGCTAACTGAAGATGAATATGATTCTAGTGATGAACAGGTGGCTGGTAAAGCAGACCCTTAG 552 0.4239 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPNESPYQGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNASDPLNGEAAALMMRDKAAYELRVKEYCEKYAKPEDIGAMPEEKSSDEELTEDEYDSSDEQVAGKADP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0970 183 MobiDBLite consensus disorder prediction 150 183 - -
Lal6g0970 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
Lal6g0970 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Lal6g0970 183 CDD UBCc 7 143 IPR000608 -
Lal6g0970 183 Gene3D Ubiquitin Conjugating Enzyme 1 159 IPR016135 -
Lal6g0970 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-21 KDA 1 3 183 - -
Lal6g0970 183 SMART ubc_7 4 148 - -
Lal6g0970 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Lal6g0970 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Lal6g0970 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0970 Lal-Chr6 6886571 6889338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0970 3 117 Miscellaneous Gene Families AT3G17000 22.764 1.19e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0970 K10576 - gmx:548025 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0970 6 6886571 6889338 Lal6g0970 6 6886571 6889338 ECH
Lal6g0970 6 6886571 6889338 Lal22g0851 22 6446164 6447211 LSH
Lal6g0970 6 6886571 6889338 Lal6g0970 6 6886571 6889338 PCT
Lal6g0970 6 6886571 6889338 Lal22g0851 22 6446164 6447211 PCT
Lal22g0851 22 6446164 6447211 Lal6g0970 6 6886571 6889338 PCT