Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0851 ATGAATAAACACAAGGTGGAGATGATGAATGATTACATGACAGAGTTTTATGTCCATTTCCATGGACCCAATGACAGTCCTTATAAAGGAGGTGTGTGGAAAGTGAGAGTTGAACTTCCATATGATTATCCTTATAACTCTCCTCGCATTAGCTTTACCAATAAAATCTTTCACCCAAATATTGATGAAGATTCAGGAACAGTTTGTCTGGATGTTATCAATGAAACCTGGACTCCCATGTTTGATTTAGTGAATGTATTTGAGATGTTTCTACCACAACTTCTTCTGTTTCCCAATGAATCAGATCCCCTCAATGGAGAAGCTGCAGCATTAATGATACATGATATAGTTGCTTATGAACTAAAGGTTAAAGAGTACTGTGAGAGATATGCTAAGCCTGAAGACATAGGAATTGTGGAAGAAAAGAAAACAAATGAAGATAAAAATGATTCTAATGAAGAACATGTGATTGATAAGCCAGACTCTTAG 489 0.3579 MNKHKVEMMNDYMTEFYVHFHGPNDSPYKGGVWKVRVELPYDYPYNSPRISFTNKIFHPNIDEDSGTVCLDVINETWTPMFDLVNVFEMFLPQLLLFPNESDPLNGEAAALMIHDIVAYELKVKEYCERYAKPEDIGIVEEKKTNEDKNDSNEEHVIDKPDS 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0851 162 MobiDBLite consensus disorder prediction 137 162 - -
Lal22g0851 162 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 57 73 IPR023313 -
Lal22g0851 162 Gene3D Ubiquitin Conjugating Enzyme 1 145 IPR016135 -
Lal22g0851 162 CDD UBCc 4 127 IPR000608 -
Lal22g0851 162 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA 1 154 - -
Lal22g0851 162 SUPERFAMILY UBC-like 5 132 IPR016135 -
Lal22g0851 162 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 154 - -
Lal22g0851 162 SMART ubc_7 2 132 - -
Lal22g0851 162 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 132 IPR000608 -
Lal22g0851 162 Pfam Ubiquitin-conjugating enzyme 5 126 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0851 Lal-Chr22 6446164 6447211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0851 15 141 Miscellaneous Gene Families AT3G17000 27.407 1.65e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0851 K10576 - aof:109836590 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0851 22 6446164 6447211 Lal22g0851 22 6446164 6447211 ECH
Lal6g0970 6 6886571 6889338 Lal22g0851 22 6446164 6447211 LSH
Lal6g0970 6 6886571 6889338 Lal22g0851 22 6446164 6447211 PCT
Lal22g0851 22 6446164 6447211 Lal6g0970 6 6886571 6889338 PCT