Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0600 ATGGTGGTAGCTGCAGGTTCTAATGTTGCTAAGTTCAAATTGAGAAGAGGGAATAGTTCTACTCATAATGTTGTGAGTGGTGATAACAGTGATGGAGATCTTTCTAGAATGAATAGTAGTGTGTGTTTTCCTTCAATGGTTGAGGTGGAAAGAGACCCTTCCTGTGTTTCATTCACCACTTTCAATATCTTGGCTCCTATTTACAAACGGATTGACCCACAGAACCCGGGCCTCCGTGAGAGTGACTTCAGATCATTGTGGTTGGCCAGGAATGAAAGGATATTGGATAGTTTGCTTTCTGAATCATCTTCCATAATGTGCCTCCAGGAATTTTGGGTTGGAAATGAAGAACTTGTTCACATGTATGAGGAGAGACTTGGGGATGCTGGCTACCGTCTCTTCAAGCTTGCTCGAACCAACAACCGTGGAGATGGTCTGCTGACTGCCATACATAAAGAATATTTAAGTGTTGTCAATTACCGAGAGCTGCTCTTAAACGATTTTGGTGATCGAGTTGCCCAGTTGTTACATGTTCAATCAGTTTCCCCCCTTTTAAAAAATCAAAAGGGCAGTTTTCACCAAGAGTTTCTGATGGTGAACACACACCTATTATTTCCTCATGATTCAAGTTTTTGTATAGTGAGATTGCATCAGGTTTACCAAATATTGCAATATGTGGAACTGTATCAGAGAGAAAACAGGCTCAAACCTATGCCTATTATACTTTGTGGTGACTGGAACGGAAGCAAAATGGGGCATGTTTACAAGTTTCTTACGTCGCAGGGGTTTGTATCATCATATGATATTGCTAGTCAGTATACTGAGAGTTATGCAGATTCCAACAAGCAGTGGGTTAGTCACCAAAACCATAGAGGAAATATATGTGGTGTTGACTTCATTTGGCTTTGCAATCCTAACCAAGCACGTAAACCGTTGAAGACAAGTTGGGCTGAAGCGGTATTTAGTATGCTAAAGTATCAGTTACGAAAAGCTTCATTGTCTGAAGATAATGCATTTGCCTTTCTGAAGGGTGATCACTGTGTTGATTCTGTGACATATTTTAGCTTCTCTGAAGCTCTCCGTAAGGTAAAGTTATTTGATGTCCCTTATGGACTATGCTTCCAACAATTGCAAGATCTATGGAATCAAGCAGATGTTGATGGAAATGGCGTCATCGACTATGAAGAATTCAAGCAAAAGATTTGGAATTCTACATGTCCAGAGCATGTGTTGGAAAATTTGATTGGTTCAATGGAGGATAGTAATACAGATCAAGAGCAAGAAACCATTGGTTTTAAGGTGAATAATGCAATGTTGTTCCCTCATGAAGTGGAGAAAGGACTGTGGCCAGAAGACTACTCTCTTTCTGATCATGCTAGACTCAGTGCTGTATTCTCAGCAGCAAGGATGAGATGTTCTGTGTCACAAAATTGTACTTAG 1440 0.4042 MVVAAGSNVAKFKLRRGNSSTHNVVSGDNSDGDLSRMNSSVCFPSMVEVERDPSCVSFTTFNILAPIYKRIDPQNPGLRESDFRSLWLARNERILDSLLSESSSIMCLQEFWVGNEELVHMYEERLGDAGYRLFKLARTNNRGDGLLTAIHKEYLSVVNYRELLLNDFGDRVAQLLHVQSVSPLLKNQKGSFHQEFLMVNTHLLFPHDSSFCIVRLHQVYQILQYVELYQRENRLKPMPIILCGDWNGSKMGHVYKFLTSQGFVSSYDIASQYTESYADSNKQWVSHQNHRGNICGVDFIWLCNPNQARKPLKTSWAEAVFSMLKYQLRKASLSEDNAFAFLKGDHCVDSVTYFSFSEALRKVKLFDVPYGLCFQQLQDLWNQADVDGNGVIDYEEFKQKIWNSTCPEHVLENLIGSMEDSNTDQEQETIGFKVNNAMLFPHEVEKGLWPEDYSLSDHARLSAVFSAARMRCSVSQNCT 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0600 479 Gene3D Endonuclease/exonuclease/phosphatase 44 474 IPR036691 -
Lal6g0600 479 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 19 473 - -
Lal6g0600 479 SUPERFAMILY DNase I-like 48 271 IPR036691 -
Lal6g0600 479 Pfam Endonuclease/Exonuclease/phosphatase family 87 271 IPR005135 GO:0003824
Lal6g0600 479 ProSitePatterns EF-hand calcium-binding domain. 385 397 IPR018247 -
Lal6g0600 479 SUPERFAMILY EF-hand 354 402 IPR011992 -
Lal6g0600 479 ProSiteProfiles EF-hand calcium-binding domain profile. 372 407 IPR002048 GO:0005509
Lal6g0600 479 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 19 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0600 Lal-Chr6 3845464 3850077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0600 121 473 EF-hand Containing Proteins AT1G02270 62.921 7.86e-163 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0600 - - lang:109338839 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0600 6 3845464 3850077 Lal6g0600 6 3845464 3850077 ECH
Lal6g0600 6 3845464 3850077 Lal18g1066 18 13736578 13740608 LSH