Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1066 ATGGTAGTATCTGCAGGTTCTAATGTTGCTAAGTTCAAATTGAAAAGAGGGAACAGTTCTGCTCATAATGTTATGAGTGATGATAACAGTGATGGAGATCTTTCTAGAATGAATAGTAGTATGTGCTTTCACTCAATGGCAGAGGTGGACAGAGACCCTTCCTATGTTTCATTCACCACTTTCAATATCTTGGCTCCTATTTACAAACGGATTGATCCACAAAATCCCGTCCTCCGAGAAAGTGACTTCAGATCATTGTGGATGGCCAGGAATGAAAGGATATTGGATTCCTTGCTTTCTGAATCATCTTCCATAATGTGCCTCCAGGAATTTTGGGTCGGAAATAAAGAACTTGTTGACATGTATGAGGAGAGACTTGGGGATTCTGGCTACTGTCTCTTCAAGCTTGCTCGAACAAATAATCGTGGAGATGGTCTGCTGACTGCCATACATAAAGAACATTTAAGTGTTGTGAATTACCGAGAGTTGTTCTTAAATGATTTTGGCGATCGAGTTGCTCAGTTGTTACATGTTAAGTCAGTTTCCCCCTTTTCACAAAACCAAAAGGGCAGTTTTCACCAAGAGTTTTTGGTTATCAACACACACTTGTTATTTCCTCATGATTCAAGTTTTTGTATAGTGAGATTGCATCAGGTTTACCAAATATTGCAATTTGTGGAATTGTATCAGAGAGAAAACAGGCTCAAACCTATGCCTATTATACTTAGTGGTGACTGGAATGGAAGCAAGCATGGGCATGTTTACAAGTTTCTTATGTCACAGGGATTTGTATCTTCATATGATATTGCTAGTCAATATACTGATACTTATGCAGATTCCAACAAGCAGTGGGTTAGTCATCGAAATCATAGAGGAAATATATGTGGTGTTGACTTCATTTGGCTTTGCAATCCTAACCAAGCACGTAAACCCTTGAAGACAAGTTGGGCTGATACTATATTCAGTATGCTAAAGTACCAGTTACGAAAAGCTACATTGTCTGAAGATGATGCATTTGCCTTTCTGAAGGGTGATCATTGTGTTGAATCGGTCACATATTTTAGCTTCTCTAAAGCTCTCCATAAGGCAAAGTTAATTGGTGTCCCTTATGGATTGTGCTTCCAACAGTTACAAGATCTATGGAATCAAGCCGATGTTGATGGAAATGGTGTCATCGATTATGAAGAATTCAAGCAAAAGATTTGGAATTCTAAATGTCCAGAGAATGTGTTGGGAAATTTGATTGGGTCAATGGAGAATACTAATACAGATCAAGAACATGAAGCCATTGGTTTTAAGGTGAAGAATGCAATGTTATCCCCTCATGAAGTGGAGAAAGGAATGTGGCCAGAAAACTACTCTCTTTCTGATCATGCTATACTCACTGCTGTATTTTCACCAGCTAGGATGAGATGTTCTGTGTCACAAAATTGTAGCTAG 1440 0.3875 MVVSAGSNVAKFKLKRGNSSAHNVMSDDNSDGDLSRMNSSMCFHSMAEVDRDPSYVSFTTFNILAPIYKRIDPQNPVLRESDFRSLWMARNERILDSLLSESSSIMCLQEFWVGNKELVDMYEERLGDSGYCLFKLARTNNRGDGLLTAIHKEHLSVVNYRELFLNDFGDRVAQLLHVKSVSPFSQNQKGSFHQEFLVINTHLLFPHDSSFCIVRLHQVYQILQFVELYQRENRLKPMPIILSGDWNGSKHGHVYKFLMSQGFVSSYDIASQYTDTYADSNKQWVSHRNHRGNICGVDFIWLCNPNQARKPLKTSWADTIFSMLKYQLRKATLSEDDAFAFLKGDHCVESVTYFSFSKALHKAKLIGVPYGLCFQQLQDLWNQADVDGNGVIDYEEFKQKIWNSKCPENVLGNLIGSMENTNTDQEHEAIGFKVKNAMLSPHEVEKGMWPENYSLSDHAILTAVFSPARMRCSVSQNCS 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1066 479 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 19 473 - -
Lal18g1066 479 ProSiteProfiles EF-hand calcium-binding domain profile. 372 407 IPR002048 GO:0005509
Lal18g1066 479 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 19 473 - -
Lal18g1066 479 ProSitePatterns EF-hand calcium-binding domain. 385 397 IPR018247 -
Lal18g1066 479 SUPERFAMILY EF-hand 370 402 IPR011992 -
Lal18g1066 479 SUPERFAMILY DNase I-like 45 285 IPR036691 -
Lal18g1066 479 Gene3D Endonuclease/exonuclease/phosphatase 36 473 IPR036691 -
Lal18g1066 479 Gene3D - 352 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1066 Lal-Chr18 13736578 13740608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1066 121 473 EF-hand Containing Proteins AT1G02270 61.667 8.20e-164 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1066 - - lang:109338839 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1066 18 13736578 13740608 Lal18g1066 18 13736578 13740608 ECH
Lal6g0600 6 3845464 3850077 Lal18g1066 18 13736578 13740608 LSH