Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0540 ATGAATGCTATAGCTACTGCTTCATCTCTTACTCTACCAATCTTTTGCAGTAGATCATCCAAGTTTGAAGCCAAAAGGGGTTTGAAAGGTAGATTTGGGGTGTTTGCTGTGTTTGGAGAAATAGAGAAGAAAAGTGAACGGGGTGCACTATTTAATGTAGAAGAGCCAAGATCTAAAGCTCCTGAGTATAAAGGGAAGGTTTTGGATATATATCAAGCCATAGAAGTGGCTAGATATGATATTCAATATTTGGACTGGCGAGCTCGGCAAGACGTACTTTCTATTGTGCTCCTCCATGAAAAGGTGGTGGAAGTTCTTAATCCTCTAGCACGTGAATATAAGTCAATCGGAACTATGAAAAAGGAGCTAGCTGAGCTGCACGAAGAATTAGCAGACGCACACAGACAGGTCCATATATCTGAAGCAAGGGTTGGCACTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTAAATGATAAGCTGTTGCAAGAAAGAAGCACAGCTGAAATCGCTCCGACGTCCTCTCCTCCCAGTACTTCTGCGAAATTTGTAGATACTGAAAAGAGAAGGAAACCACGGAAAAGATTGAATGTATCAGGCCCAGTTCAGTCATACCATCCAAATTTGAAGAATTTCTGGTATCCGGTTGCTTTCTCAACAGACCTAAAGGCTGATACCATGGTCCCAATAGAATGTTTTGAGGAACCATGGGTTATCTTTAGAGGGAAGAATGGGGAACCTGGATGTGTCCAGAATACATGTGCACACAGAGCATGTCCCTTGCACCTTGGTTCTGTGAATGAGGGTCGTATCCAATGCCCCTACCATGGCTGGGAATATACCACTGACGGAAAATGTGAGAAAATGCCATCTACTCAACTGCTAAATGTGAAGATAAAGTCAATTCCGTGTTTTGAGAAAGAGGGAATGATCTGGATTTGGCCTGGCAATGATGCCCCAACAGCCACACTTCCATCTTTACTACCTCCTTCTGGGTTCGTAATACATGCTGAGATTGTCATGGAACTTCCAGTTGAACATGGGTTACTTTTGGACAACCTTTTGGATCTTGCACATGCTCCTTTTACTCATACTTCAACCTTCGCTAAGGGATGGGTTGTTCCCAGCTTGGTGAAATTTTTGACACCTTCATCTGGCTTGCAAGGATACTGGGATCCTTATCCAATTGATATGGAATTTAGACCACCTTGCATGGTTCTATCGACCATCGGAATTTCAAAGCCCGGTAAACTGGAGGGACAAAACACAAGTCAGTGTGCAACACACTTGCACCAACTTCATGTCTGCTTACCATCTTCAAAACATAAAACAAGATTGCTATACAGAATGTCATTGGATTTTGCTCCTTTGCTTAAGCATATTCCTTTTATGCAATATCTATGGAGACATTTTGCAGAACAGGTTTTAAACGAGGATCTACGACTAGTGTTAGGGCAGCAAGAAAGGATGAACAAAGGTGCAAACATATGGAATTTCCCGGTTTCCTATGATAAGCTTGGTGTAAGGTACAGGTTATGGAGAGATGCATTAGAGCAAGGAGCTAAGCAATTACCCTTTAGCAAGAAGAATGAAAATGAATGA 1605 0.4206 MNAIATASSLTLPIFCSRSSKFEAKRGLKGRFGVFAVFGEIEKKSERGALFNVEEPRSKAPEYKGKVLDIYQAIEVARYDIQYLDWRARQDVLSIVLLHEKVVEVLNPLAREYKSIGTMKKELAELHEELADAHRQVHISEARVGTALDKLAYMEELVNDKLLQERSTAEIAPTSSPPSTSAKFVDTEKRRKPRKRLNVSGPVQSYHPNLKNFWYPVAFSTDLKADTMVPIECFEEPWVIFRGKNGEPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYTTDGKCEKMPSTQLLNVKIKSIPCFEKEGMIWIWPGNDAPTATLPSLLPPSGFVIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWVVPSLVKFLTPSSGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTSQCATHLHQLHVCLPSSKHKTRLLYRMSLDFAPLLKHIPFMQYLWRHFAEQVLNEDLRLVLGQQERMNKGANIWNFPVSYDKLGVRYRLWRDALEQGAKQLPFSKKNENE 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0540 534 MobiDBLite consensus disorder prediction 168 201 - -
Lal6g0540 534 PANTHER CHLOROPHYLLIDE A OXYGENASE, CHLOROPLASTIC-LIKE 70 529 - -
Lal6g0540 534 Gene3D - 337 526 - -
Lal6g0540 534 CDD Rieske_RO_Alpha_Cao 197 325 - -
Lal6g0540 534 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 214 314 IPR017941 GO:0051537
Lal6g0540 534 Pfam Pheophorbide a oxygenase 401 495 IPR013626 GO:0010277
Lal6g0540 534 SUPERFAMILY Bet v1-like 310 521 - -
Lal6g0540 534 Pfam Vanillate O-demethylase oxygenase C-terminal domain 347 371 IPR044043 GO:0016491
Lal6g0540 534 Pfam Rieske [2Fe-2S] domain 214 294 IPR017941 GO:0051537
Lal6g0540 534 MobiDBLite consensus disorder prediction 168 183 - -
Lal6g0540 534 Coils Coil 116 143 - -
Lal6g0540 534 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 255 277 IPR015881 GO:0005506|GO:0051537
Lal6g0540 534 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 70 529 - -
Lal6g0540 534 Gene3D - 208 330 IPR036922 GO:0051537
Lal6g0540 534 SUPERFAMILY ISP domain 209 319 IPR036922 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0540 Lal-Chr6 3464452 3468473 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0540 K13600 - gmx:100806298 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0540 6 3464452 3468473 Lal6g0540 6 3464452 3468473 ECH
Lal22g0488 22 3231737 3236192 Lal6g0540 6 3464452 3468473 LSH