Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0488 ATGAATGCTATAGCTACTGCTTCAGCTCTCACTCTACCAATCTTTTATAGTAGAGCATCCAAGTTTGAAGCCAAAAGGGGTTTGAAAGGTAGATTTGGTGTGTATGCTGTATTTGGAGAAGGAGAGAACAAAAATGCATGGGGTGCACTCTTTGATGTAGAGGATCCAAGATATAAAGTCCCACAGTATAAAGGGAAACTTTTGGATGTATATCATGCCATAGAAGTGGCTAGATATGATATTCAGTACTTGGATTGGCGAGCTCGGCAAGACGTACTTACTATCGTGCTCCTCCACAAAAAGGTGGTGGAAGTTCTTAATCCTCTCGCTCGCGAATACAAGTCAATAGGAACCATGAAAAAGGAGCTAGCTGAGTTGCAGGAAGAATTAGCCCAAGCGCACAAGCAGGTTCATATATCTGAAGCAAGGGTTGGCACTGCTTTAGATAAACTAGCTTATCTGGAAGAATTGGTAAATGACAAGTTGTTGCAAGAAAAAAGCACAGATGAAGTCGCCACGACATCCTCTCCTCCCAGTTCTTTGGAAAAATCTGTAGATACCGAAAAGAGAAAGAAACCACAGAAAAGATTGAATGTATCAGGCCCAGTTCAGTCATACCATTCGAATTTGAAAAATTTCTGGTATCCGGTTGCTTTCTCAACAGGCCTAAAGGATGATACCATGGTCCCAATAGAATGTTTTGAGGAACCATGGGTTATCTTTAGAGGGAAGAATGGGGAACCTGGATGTGTCCAGAATACATGTGCACACAGAGCATGTCCTTTGCACCTTGGTTCTGTAAACGAGGGTCGTATCCAATGCCCCTACCATGGCTGGGAATATGCCACCGATGGAAAATGTGAGAAAATGCCATCAACTAGACAAGTAAATGTGAAGATAAAGTCAATTCCGTGTTTCGAGAAAGAAGGGATGATCTGGATTTGGCCTGGCAGTGACCCCCCAACAGCCACATTTCCATCTTTACTACCTCCTTCTGGGTTTGTAGTACATGCCGAGATTGTCATGGAACTTCCGGTTGAACATGGGTTACTTTTGGACAATCTTTTGGATCTTGCCCATGCCCCTTTTACTCACACTTCAACTTTCGCTAAAGGATGGAGTGTTCCAAGCTTGGTGAAATTTTTGACACCTTCATCTGGTCTGCAAGGATACTGGGATCCCTACCCCATTGATATGGAGTTTAAACCACCTTGCATGGTTTTATCAACCATTGGAATTTCAAAGCCTGGTAAACTGGAGGGACAAAACACAAGCCAGTGCGCAACGCATCTGCACCAACTTCATGTCTGCTTACCATCCTCAAAACAAAAAACAAGATTGCTATACAGAATGTCATTGGATTTTGCTCCTTTGCTTAAACATATTCCTTTTATGCAATACCTCTGGAGGCATTTTGCTGAACAAGTTCTGAATGAGGATCTTCGGCTAGTGTTAGGGCAGCAAGAGAGGATGAACAATGGTGCAAATATATGGAACTTTCCAGTATCCTATGACAAACTTGGGGTAAGGTACAGATTATGGAGAGATGCATTGGAGCAAGGAGCTAAGCAACTACCCTTTAACAGAAACAATGAATGA 1599 0.4259 MNAIATASALTLPIFYSRASKFEAKRGLKGRFGVYAVFGEGENKNAWGALFDVEDPRYKVPQYKGKLLDVYHAIEVARYDIQYLDWRARQDVLTIVLLHKKVVEVLNPLAREYKSIGTMKKELAELQEELAQAHKQVHISEARVGTALDKLAYLEELVNDKLLQEKSTDEVATTSSPPSSLEKSVDTEKRKKPQKRLNVSGPVQSYHSNLKNFWYPVAFSTGLKDDTMVPIECFEEPWVIFRGKNGEPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYATDGKCEKMPSTRQVNVKIKSIPCFEKEGMIWIWPGSDPPTATFPSLLPPSGFVVHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPSSGLQGYWDPYPIDMEFKPPCMVLSTIGISKPGKLEGQNTSQCATHLHQLHVCLPSSKQKTRLLYRMSLDFAPLLKHIPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANIWNFPVSYDKLGVRYRLWRDALEQGAKQLPFNRNNE 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0488 532 SUPERFAMILY ISP domain 209 318 IPR036922 GO:0051537
Lal22g0488 532 Pfam Pheophorbide a oxygenase 401 495 IPR013626 GO:0010277
Lal22g0488 532 Coils Coil 109 143 - -
Lal22g0488 532 MobiDBLite consensus disorder prediction 168 182 - -
Lal22g0488 532 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 214 314 IPR017941 GO:0051537
Lal22g0488 532 Gene3D - 336 525 - -
Lal22g0488 532 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 70 528 - -
Lal22g0488 532 CDD Rieske_RO_Alpha_Cao 197 324 - -
Lal22g0488 532 SUPERFAMILY Bet v1-like 310 521 - -
Lal22g0488 532 Pfam Rieske [2Fe-2S] domain 214 297 IPR017941 GO:0051537
Lal22g0488 532 Gene3D - 207 330 IPR036922 GO:0051537
Lal22g0488 532 MobiDBLite consensus disorder prediction 166 202 - -
Lal22g0488 532 PANTHER CHLOROPHYLLIDE A OXYGENASE, CHLOROPLASTIC-LIKE 70 528 - -
Lal22g0488 532 Pfam Vanillate O-demethylase oxygenase C-terminal domain 347 371 IPR044043 GO:0016491
Lal22g0488 532 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 255 277 IPR015881 GO:0005506|GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0488 Lal-Chr22 3231737 3236192 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0488 K13600 - gmx:100806298 940.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0488 22 3231737 3236192 Lal22g0488 22 3231737 3236192 ECH
Lal22g0488 22 3231737 3236192 Lal6g0540 6 3464452 3468473 LSH