LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal6g0539	ATGCCTTTCAATTTTCAAAGTAATAATAGTCTGTTAAACCCAGTGATGATGGATAAGAAGATATGGTTATGGAAGAGGAAGTCTTCTGATAAGAGCCCTGGTGAAACTGAAAGTTCAGGATCTGTGTCATCTTATTCTGAGAGATACTCAGATGAACAGGAAGAATCAAAGGAATCTTCTAATGGAAGCAAACACTCACCTGATGTCACCTCAAAAGCCGTAGACTGTGATGAAGATGATAATGATAGTTCAATCATCAATGCAAAATCTGTACCTACTACAGGCATCACAAATGATGGTTCACTAGAGAGAGATGAAAATGGAGAAAATGAAAATATAACAAAATTAAAGGATGGTGATCTAAATGATGGATTGAAGACTTTGTCAGAGAACCTACCTTCAGGGCTTGTAAATGTCAATGCCAAAGAAGACTTGGTTCAACAGCATGCCAAAGAAGACTTGGTTCAACAGCATGCCAAAGTTGCTGAAGAAGCCATTGCAGATTGTGATTGGGCCGTTTTCGTTTACTCAGGCTGGGAAAAGGCTGAAAAAGAAGTGGTGGTATTAAAGAAGCAACTTGATGTAGTAACTCTAAGGAATTCAGCTCTGGAAGATCGAGTTGCTCATCTAGATGGTGCACTTAAGGAGTGTGTTAGGCAGCTAAGGCAGACAAGAGAAGTTCAAGAAGAAAAAATTCATGATGCTGTAGTGAAGAAAACTCTTGACTTGGAATCAGCTAAAATTGAACTTGAGAACAAGCTCGTTGAGCTTCAGAGCAAATTAGATGCTTCTAATGCCAAGTCTTCTATTGATATTGGTATGTCTCAAAGGGTTGAGTATTTGGAGAAACAGAACATGGCTCTTAGGCATGAGCTCCTAGCTCGATTAGAAGAGCTGGAAACCATGACGATTGAGAGAGATTTAAGCACTCAAGCTGTTGAAACAGCTAGCAAGCAACATTTAGAAAACATCAAGAAAATTGCCAAGCTTGAGGTGGAGTGCCGGAGACTGAAGAGCATTGCTTCTAGAGCTTCCTGTGTTAATGATCATATATCCATTACTTCATCCTCATTTTGTGTTGAGCCTCTCAAAGATGGTCAATCAGACAGTGGTGAGTGGCTTAATGCAGTGGAGATTGACACTCAAAAGATGAGTGGCTCAGAACTAAACAAGTGTGAGCCAAGTTGTTCTGACTCATGGGCATCCGCACTAATTGCTGAGCTTGATCAGTTCAAAAATGAAAAGTGCAAACAACAAACTCCATCTAGTTCCGTTAAAATCGATCTTATGGATGATTTTCTTGAAATGGAACGACTTGTTGCATTGCCCGAAACTAAGAACGAAAATATTGTTCGAGAGTCAGTTGTTGCCAATCAATGCATTTATCAGCAAATGCAAGAACTAAAAGACAATTTAGAGAAAATAGAGGCAGAAAAAGCTGAATTAGTGATAACTTTGATGAATAGTGAAGATTGTATCAAGGAGTCACAACTTCAGTTGAGGGAGGCAGAAAATAAATTGGATGAGTTGCAAAGAGAGCTAGAAAATGCATACAAATCAAATCAAATAATAGAAAATGAGCTATTGAGCATGAAGGCACATTCTCAAACATTATCTGCAAAGGTTGATTTATTAGAAGCAGAGGTTGATAAGGAGAGGTCTTTGTCAAATGAAGTTGCAATAAAGTATAAGGAATTAGAGGACGAGATACTCAGGTCAATAGCTATCTCATATGGAGAAAAGAAGATTAAGCAGGAAGACTTAGAAGTAGCTGCTGGAAAGCTTGCTGAGTGCCAGAAAACAATAGCAACTTTAGGGGATCAATTAAAATCCCTGGCTACAATAGAAGATTTCCTTATTGATACTGCTACCCTTCCTGCGAGTCCTTCGCTTGTCGTTCGTGCGAGTGGAGAGACGTGGAAGCTGCATCCAAATGAACGCATTTTCGCATAA	1953	0.3917	MPFNFQSNNSLLNPVMMDKKIWLWKRKSSDKSPGETESSGSVSSYSERYSDEQEESKESSNGSKHSPDVTSKAVDCDEDDNDSSIINAKSVPTTGITNDGSLERDENGENENITKLKDGDLNDGLKTLSENLPSGLVNVNAKEDLVQQHAKEDLVQQHAKVAEEAIADCDWAVFVYSGWEKAEKEVVVLKKQLDVVTLRNSALEDRVAHLDGALKECVRQLRQTREVQEEKIHDAVVKKTLDLESAKIELENKLVELQSKLDASNAKSSIDIGMSQRVEYLEKQNMALRHELLARLEELETMTIERDLSTQAVETASKQHLENIKKIAKLEVECRRLKSIASRASCVNDHISITSSSFCVEPLKDGQSDSGEWLNAVEIDTQKMSGSELNKCEPSCSDSWASALIAELDQFKNEKCKQQTPSSSVKIDLMDDFLEMERLVALPETKNENIVRESVVANQCIYQQMQELKDNLEKIEAEKAELVITLMNSEDCIKESQLQLREAENKLDELQRELENAYKSNQIIENELLSMKAHSQTLSAKVDLLEAEVDKERSLSNEVAIKYKELEDEILRSIAISYGEKKIKQEDLEVAAGKLAECQKTIATLGDQLKSLATIEDFLIDTATLPASPSLVVRASGETWKLHPNERIFA	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal6g0539	650	Pfam	Filament-like plant protein, long coiled-coil	151	267	IPR008587	-
	Lal6g0539	650	Pfam	Filament-like plant protein, long coiled-coil	274	340	IPR008587	-
	Lal6g0539	650	Pfam	Filament-like plant protein, long coiled-coil	463	614	IPR008587	-
	Lal6g0539	650	Pfam	Filament-like plant protein, long coiled-coil	393	453	IPR008587	-
	Lal6g0539	650	Coils	Coil	458	527	-	-
	Lal6g0539	650	MobiDBLite	consensus disorder prediction	85	101	-	-
	Lal6g0539	650	SUPERFAMILY	Tropomyosin	463	614	-	-
	Lal6g0539	650	PANTHER	FILAMENT-LIKE PLANT PROTEIN 1-RELATED	150	525	-	-
	Lal6g0539	650	PANTHER	FILAMENT-LIKE PLANT PROTEIN 1-RELATED	17	151	-	-
	Lal6g0539	650	PANTHER	FILAMENT-LIKE PLANT PROTEIN 1-RELATED	520	647	-	-
	Lal6g0539	650	PANTHER	FILAMENT-LIKE PLANT PROTEIN 4	17	151	-	-
	Lal6g0539	650	PANTHER	FILAMENT-LIKE PLANT PROTEIN 4	520	647	-	-
	Lal6g0539	650	PANTHER	FILAMENT-LIKE PLANT PROTEIN 4	150	525	-	-
	Lal6g0539	650	Coils	Coil	240	267	-	-
	Lal6g0539	650	MobiDBLite	consensus disorder prediction	26	109	-	-
	Lal6g0539	650	MobiDBLite	consensus disorder prediction	70	84	-	-
	Lal6g0539	650	MobiDBLite	consensus disorder prediction	48	62	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal6g0539	Lal-Chr6	3458871	3463119	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal6g0539	-		-	aprc:113847186	727.628

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal6g0539	6	3458871	3463119	Lal6g0539	6	3458871	3463119	ECH
	Lal18g1123	18	14192570	14197512	Lal6g0539	6	3458871	3463119	LSH
	Lal22g0487	22	3226073	3231101	Lal6g0539	6	3458871	3463119	LSH