Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0511 ATGAGATCTGCTTTTTATGGGGAAAAGGATACGAAGAAGAAGAATCGTCGATCCAAACAAGACCATGCCCACTCTACCACAGCATCTGAAGTAAGCGAGATCCATGAGTTGTCGTTAGATTGTTCAGAAAAAAATGGAACACCTACTCATAAGACGACCGATGCTGCCTTGAGCAGTTCAACAAACCAACATGGGGTCAATTTTACTTCCCTAAATGAGCAAGGTTTATCCAAATCAGCAAAGGTTTCTTTCGTTTCAATGCCCCCAATGCACATCAATGGGCAAGTTGAATATTTTGATTTACAAGATATTGAAGATACGGAAACACATAAGGGAGGAACTGGTTTGAAGTCGTTTTCTGAATCCACTGTTTGCAGAGGATCATCGGGAACGACTACTAATGAAAAAAAAGAATCTGTGCCTTGCGGTCAAATTGGGCATTACGGCCAGAGAACTTATTTTAGTCCACACTGGTCTATGGATGCTGTTGAAAAGGCAATAGAGAATGGTGATGTCTTCAAAGCTCCCTTTTATGTCAATGCTCACAATAGACTTGAGGTTTCTGACATCTATGATCTATCTCATAGTCATTCCTTTTTTCTGTTCTTCTATTTTTGGGGTGGGCCTCGTGTGGCCTACTGTAGAATTGATGGAATGCCAACAGATATTCTCATCAATGGAATTCCTGCCCAGAACAGAGCGGTGGAAGGTGATATTGTTGCAGTTAAGATTGATCCTCTCTCAATGTGGACAAAAATAAAAGGACCCAGTGTCAGTGTGGCTTGTAAAAATACTGTGCCACTGGAAGTCTGTAACGTCCTTATGGAAGATGATAAAGTGTATGATAATTTTTGTGAAGTAGAAGGTAAACTAGATGCCAAGCATGAGTCTGGTCATTACAGAAGCTCCACTGGTCAAAACAATGAAGGTGGTGATAAAAAATCTATCCCTTCTAGAAGCAATCATTTTCCTGAGAGCAGATATGATTATGAGAATAATGGTTCCATGGGTTCAACTTTAAATCTCAAACCACATGGAATAACCAGCCTTGATACAGTTGATGGACTGCCCTGTCCTGCTTTTGATTCTTTAAAGATTAAATGCTGTAATGAAAAGAGTGAAGTAATTGATGCATTGGAAAAGTTTTGTTTGTTGTCTAATTCTTTCCCTTCTAAAAGACCGACTGGCAAGGTGGTTGCTATTATTGAGAGGTCTGCACATAGAGATCGTATTGTTGGCCATCTTTATTCGAAGAATTGGTCTGCTCCCACAGCCATGAGCAAAAAAGATTCAAGGAAAAACAAGAACTTGAGTTCTGATCATGAGCATATCCAGTTGATACCAACTGATCCAAAGTTTCCGAACATGACTTGTTTTGTTGAAGAATTACCCAAGTGCGTTAAGAAAAGAGTGAAAAGCGGTGATGTGACCGTTGACATTGATCTAGTAGCTGCTCAATTTGATGATTGGGATGAAGAAAGTTTTTTGCCCAAGGCTCACATCTTGCATATTTTTGGACATGGTAGTGAGTTTCAGCCCCAGTTAGATGCAATTTTGTTTCGGAATGCAATCTGTTTGTCTGAATTTAGTCCTGAAGCTTTGTCCTGCCTTCCATGCGTTCCTTGGGATGTACCGTTGAAGGAAATTCAGAGTAGAAAAGATCTGAGAAATTTATGCATTTTTACTATTGATCCTTCTACTGCCACAGATCTGGATGATGCACTGTCTATTGAGAAGTTACCTAGTGGGAATTATAGAGTAGGCATCCACATTGCTGATGTTTCATACTATGTTCTACCTGACACAGCCTTAGATAGTGAAGCTCAGCGTAGGTCAACTAGTGTCTATATGTTGCAAAGGAAGTTACCTATGTTGCCTCCGTTACTTTCTGAGAATATAGGTTCACTTAATCCTGGAGTGGATCGACTTACAGTTTCCATGCTCCTGGATATTAACCTTGCTGGAAATGTTGTTGACCGTTGGATTGGTCGTTCTGTTATACAATCTTGTTGTAACCTTTCTTATGAACATGCTCAGGAAATCATCGATAGGGCTACTGGTTCAAACACTGTAGCAAATGAATATCCTAAAGTATATGGCCGTTTTGAGTTGCCTGATATTATTTCATCTGTGAAGAGTCTTTATGAAATTTCAAATGTTCTGAAACACAAGAGGATTACCGTTGGAGCTCTGCGGCTTGATAACCCTAAAATTGTTTTCTTGTTGGACGAACGTGGAATTCCTTATGATAGTGTGCTTTCAGAACGGAAAGAATCAAATTTTCTTGTTGAGGAATTTATGCTTTTAGCCAATAGGACAGCTGCTGAAATCATCTTTCGAGCTTATCCTAATTGTGCATTATTGCGGAGGCATCCTGAACCTAATAAGAGGAAGCTGAGAGACTTCATGTCATTTTGTCTGAAACATGGTTTAAAAATGAAGATATCTTCATCTGGTGAAATACACAGTTCATTAGAGCAGATCAGGGAGCAACTCAAGGGCGACCCCGTTCTTTATGATATTGTTGTTTCCTATGCTACTCGGTCAATGCAGTTGGCGTCTTACTTCTGTAGTGGAGATTTGAAGGGTAATGATCATGAATGTGGTCATTATTCGTTGGCTGTCCCTTTTTACACTCATTTCACATCGCCTCTGCGTCGCTATCCTGATATTGTTGTTCATCGTACACTGCTTGCTGTTATAGAGGCCGAAGAATTGTATTTCAACGATCAAAATGCTTTACAGGTTAACAAAGATGTGGAAGTGCATAAAAGATGTTTCATGGGTATCCATTTTGATAAAAATGCTGCTGAGTCCATGGAAGGTCGGGTTGCATTATCAGCTGCAGCTTTGAAGCATAGAATCCAATGTGCTGACGTGCTTTCTGATGTTGCTGCTTATTGCAATCAGAGAAAACTTGCTAGTAGATATGTCAAGGATGCCTCTGACAAACTTTACATGTGGTTTCTTCTAAAGAAGAAGGGGGTTTTATTGTCAGAAGCAAGAGTACTGGGACTTGGCCCCAAATTCATGTCAATTTATATTCCAAGGCTAGCCATTGAGCGACGCATATACTATGATGAAGTTGAAGGCTTGACTGTGGAGTGGTTTCAGAAAACATCCACTTTGGTTCTTAGCATGTCTGCTACCAATAGACGTGCATTTAGGAGGGGTGGCTCAAATAAGTGGAGGAATTTTGATGAAGTTTCTTTGCTTACGTGCCCTTATAACCAAGATGCTGCAATTGAATCTATCATCGATGGGGAGCTTGGTTCTAGACCGGTTAATTCAGAGGCGAAGATTGACCCTGCATTTTTCCCTCTAACTCTTCGTATTCTATCGACTCTTCCAGTAGCACTTCATGCTGTTGGTTGTGATGATGGGCATCCAGATATTGGAGCGAGGTTGTACATGAGTTCATATTCCTGA 3429 0.403 MRSAFYGEKDTKKKNRRSKQDHAHSTTASEVSEIHELSLDCSEKNGTPTHKTTDAALSSSTNQHGVNFTSLNEQGLSKSAKVSFVSMPPMHINGQVEYFDLQDIEDTETHKGGTGLKSFSESTVCRGSSGTTTNEKKESVPCGQIGHYGQRTYFSPHWSMDAVEKAIENGDVFKAPFYVNAHNRLEVSDIYDLSHSHSFFLFFYFWGGPRVAYCRIDGMPTDILINGIPAQNRAVEGDIVAVKIDPLSMWTKIKGPSVSVACKNTVPLEVCNVLMEDDKVYDNFCEVEGKLDAKHESGHYRSSTGQNNEGGDKKSIPSRSNHFPESRYDYENNGSMGSTLNLKPHGITSLDTVDGLPCPAFDSLKIKCCNEKSEVIDALEKFCLLSNSFPSKRPTGKVVAIIERSAHRDRIVGHLYSKNWSAPTAMSKKDSRKNKNLSSDHEHIQLIPTDPKFPNMTCFVEELPKCVKKRVKSGDVTVDIDLVAAQFDDWDEESFLPKAHILHIFGHGSEFQPQLDAILFRNAICLSEFSPEALSCLPCVPWDVPLKEIQSRKDLRNLCIFTIDPSTATDLDDALSIEKLPSGNYRVGIHIADVSYYVLPDTALDSEAQRRSTSVYMLQRKLPMLPPLLSENIGSLNPGVDRLTVSMLLDINLAGNVVDRWIGRSVIQSCCNLSYEHAQEIIDRATGSNTVANEYPKVYGRFELPDIISSVKSLYEISNVLKHKRITVGALRLDNPKIVFLLDERGIPYDSVLSERKESNFLVEEFMLLANRTAAEIIFRAYPNCALLRRHPEPNKRKLRDFMSFCLKHGLKMKISSSGEIHSSLEQIREQLKGDPVLYDIVVSYATRSMQLASYFCSGDLKGNDHECGHYSLAVPFYTHFTSPLRRYPDIVVHRTLLAVIEAEELYFNDQNALQVNKDVEVHKRCFMGIHFDKNAAESMEGRVALSAAALKHRIQCADVLSDVAAYCNQRKLASRYVKDASDKLYMWFLLKKKGVLLSEARVLGLGPKFMSIYIPRLAIERRIYYDEVEGLTVEWFQKTSTLVLSMSATNRRAFRRGGSNKWRNFDEVSLLTCPYNQDAAIESIIDGELGSRPVNSEAKIDPAFFPLTLRILSTLPVALHAVGCDDGHPDIGARLYMSSYS 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0511 1142 SUPERFAMILY Nucleic acid-binding proteins 395 524 IPR012340 -
Lal6g0511 1142 Gene3D - 146 267 - -
Lal6g0511 1142 Pfam Dis3-like cold-shock domain 2 (CSD2) 444 522 IPR041505 -
Lal6g0511 1142 PANTHER DIS3-LIKE EXONUCLEASE 2 17 1141 - -
Lal6g0511 1142 SMART RNB_2 552 903 IPR001900 GO:0003723|GO:0004540
Lal6g0511 1142 SUPERFAMILY Nucleic acid-binding proteins 208 404 IPR012340 -
Lal6g0511 1142 Pfam RNB domain 552 901 IPR001900 GO:0003723|GO:0004540
Lal6g0511 1142 PANTHER RIBONUCLEASE 17 1141 - -
Lal6g0511 1142 MobiDBLite consensus disorder prediction 300 314 - -
Lal6g0511 1142 Gene3D - 425 509 - -
Lal6g0511 1142 SUPERFAMILY Nucleic acid-binding proteins 514 993 IPR012340 -
Lal6g0511 1142 MobiDBLite consensus disorder prediction 296 330 - -
Lal6g0511 1142 ProSitePatterns Ribonuclease II family signature. 870 894 IPR022966 -
Lal6g0511 1142 MobiDBLite consensus disorder prediction 42 61 - -
Lal6g0511 1142 Hamap DIS3-like exonuclease 2 [DIS3L2]. 9 1118 IPR028591 GO:0000175|GO:0034427
Lal6g0511 1142 MobiDBLite consensus disorder prediction 1 29 - -
Lal6g0511 1142 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0511 Lal-Chr6 3268484 3274379 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0511 K18758 - gmx:100815252 1454.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0511 6 3268484 3274379 Lal6g0511 6 3268484 3274379 ECH
Lal22g0474 22 3140941 3151426 Lal6g0511 6 3268484 3274379 LSH